PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0055s0013.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 747aa MW: 85691.7 Da PI: 4.9347

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0055s0013.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.9	3.4e-23	138	222	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC+a++++++ ++++w+v++++leHnH++ Kalax.0055s0013.1.p 138 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTVKEAN-----SRRKETRTGCQAMMRLRLVESNRWRVDEVKLEHNHSFD 222 69**************************************98887.....8999*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-20	138	222	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.2E-25	343	436	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.137	629	665	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.3E-4	640	667	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 747 aa Download sequence Send to blast
MNDDGATFSP IGEDLSPNPH EALLEESSGN SEVLIVDGSN GFGDSSNHVI GDRGREIEEE 60 CNRLLGHNEN GSGNNCSRQL LEIGTDSFEN QELDAEGKDG VGFEEDMIVI EQDGSSQGQD 120 YPVPVVGLEF ESYDDVYNYY NCYAKELGFA IRVKSSWTKR NSKEKRGAVL CCNCEGFKTV 180 KEANSRRKET RTGCQAMMRL RLVESNRWRV DEVKLEHNHS FDPERALNSK SHKKTDVGTK 240 RKVEPTFDVE VRTIKLYKTP VMDLVCNGNL LSNDGEINML FQPVKSSKLK EGDALIISSY 300 FSKLQLTNPN FLYLLDINDD GRLRNVFWVD SRSRAANGYF GDVVFLDTSC LSNKYELPLV 360 TFVGVNHHEE FILLGCALLG DETEESYNWL LRAWLTCMSG RPPQTLITDY CKALKTTVTE 420 VFPRARHHLS LSDVMQKILE NMVERQEFEA FQMLLNNIVC HILKVDDFEL AWEDMVQRFG 480 MRDNQFLQVL YQDREQWVPA YSRDSFFAGM YAIKQGDPVT AFFDAFVQKD TFLNEFIDVY 540 DGFVQKQHKK ETLDDLESRE LSVILRTRCY YESQLSNIYT KEIFEKFQYE VEMMSTCLNI 600 AQVHANGTAV TYSVKEPVGE GQLMSIREFE VMYDKSGAEV RCICSGFNFK GYLCRHALCI 660 LNFNGTQEIP CQYILSRWRK DIRRFYIPDV GSSDIDITNP IQWFEHLHKR ALQVSEEGMR 720 SQDHYQIACQ ALKESLHKVR LFAAKQ*

Sequence ? help Back to Top

Protein Sequence Length: 747 aa Download sequence Send to blast

MNDDGATFSP IGEDLSPNPH EALLEESSGN SEVLIVDGSN GFGDSSNHVI GDRGREIEEE  60
CNRLLGHNEN GSGNNCSRQL LEIGTDSFEN QELDAEGKDG VGFEEDMIVI EQDGSSQGQD  120
YPVPVVGLEF ESYDDVYNYY NCYAKELGFA IRVKSSWTKR NSKEKRGAVL CCNCEGFKTV  180
KEANSRRKET RTGCQAMMRL RLVESNRWRV DEVKLEHNHS FDPERALNSK SHKKTDVGTK  240
RKVEPTFDVE VRTIKLYKTP VMDLVCNGNL LSNDGEINML FQPVKSSKLK EGDALIISSY  300
FSKLQLTNPN FLYLLDINDD GRLRNVFWVD SRSRAANGYF GDVVFLDTSC LSNKYELPLV  360
TFVGVNHHEE FILLGCALLG DETEESYNWL LRAWLTCMSG RPPQTLITDY CKALKTTVTE  420
VFPRARHHLS LSDVMQKILE NMVERQEFEA FQMLLNNIVC HILKVDDFEL AWEDMVQRFG  480
MRDNQFLQVL YQDREQWVPA YSRDSFFAGM YAIKQGDPVT AFFDAFVQKD TFLNEFIDVY  540
DGFVQKQHKK ETLDDLESRE LSVILRTRCY YESQLSNIYT KEIFEKFQYE VEMMSTCLNI  600
AQVHANGTAV TYSVKEPVGE GQLMSIREFE VMYDKSGAEV RCICSGFNFK GYLCRHALCI  660
LNFNGTQEIP CQYILSRWRK DIRRFYIPDV GSSDIDITNP IQWFEHLHKR ALQVSEEGMR  720
SQDHYQIACQ ALKESLHKVR LFAAKQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002263391.2	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8 isoform X2
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A438I5U7	0.0	A0A438I5U7_VITVI; Protein FAR1-related sequence 8
STRING	XP_008228720.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Link Out ? help Back to Top
Phytozome	Kalax.0055s0013.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]