PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0053s0107.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 314aa    MW: 34317.4 Da    PI: 6.5219
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0053s0107.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.49.6e-19234267134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          Cs+C++ kTp+WR gp+g ktLCnaCG+++++ +
  Kalax.0053s0107.2.p 234 CSHCQVQKTPQWRAGPEGAKTLCNACGVRFKSGR 267
                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.3E-7328310IPR016679Transcription factor, GATA, plant
SMARTSM004011.3E-16228282IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.611228264IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.09E-14229291No hitNo description
Gene3DG3DSA:3.30.50.103.5E-15231265IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.88E-13233281No hitNo description
PROSITE patternPS003440234259IPR000679Zinc finger, GATA-type
PfamPF003201.1E-16234267IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEYCIEARAL KPSMRREIDV RPNQSLAVDE FVYETEVHGG GFVEDFLIDD LLDFPEKEVE  60
EEEKDSLSGC SAELETDENG NSTVTGEGDF LSQADDAAAG LAVPDDLADL EWVSRFVDDT  120
MPEFPPLYNS RKDKSGVSGR KSSGVGSLPV QLKQPRQIEP LTIPAKPRTK RRRIGRVWSL  180
NSSAASESST ASSSLSSSSI ISIPLQFGFR KPLAKKQKTN SEPVQPGDST GRRCSHCQVQ  240
KTPQWRAGPE GAKTLCNACG VRFKSGRLYP EYRPACSPTF RSDVHSNSHR KVLEMRKKKE  300
VGTGGSGLAV QSC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169173KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028957839.14e-72GATA transcription factor 5-like
TrEMBLD9ZIZ01e-70D9ZIZ0_MALDO; GATA transcription factor
STRINGXP_008236855.18e-68(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-46GATA transcription factor 5