PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0052s0115.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 552aa    MW: 61344 Da    PI: 5.0287
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0052s0115.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.51.3e-14353399455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Kalax.0052s0115.2.p 353 NHVLAERRRREKLNERFVILRSLVPFV-----TKMDKASILGDTIEYLKQLR 399
                          7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.4E-112666IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474594.32E-19349417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.841349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.03E-15353403No hitNo description
PfamPF000103.5E-12353398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-19353416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-17355404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MEIMKTDISD FLDLTICILD FFNVDHQSAR VQTVLCIPLV DGVVEFGSTE LIHEDLGLVR  60
HVKTFFNDYN QSQHTPPPKP ALSGHSTSNP TASSDHFHSQ PLLAMYNAGM SSNNNHANSH  120
NQNDEENENE EEEEEGPGLD SEAETARVSG RVGAEVSEFM HMEMSDQDIR VGSPEDASNN  180
LEPDVNLLSA SRFKNNKDDH FTSESYKIES ARRWALMQDQ MRSGAVQIQP PPFSETTPLL  240
EDLTQEDSHY SHTVSSILQN QRQPPLPDSS AGILILSADS AFALHGDQVT ATTIIGGAGA  300
GSQWLLKYIL FTIPYLHAKY HEENEPSKSV DMSEAAQRLK KGAGTPQEDM SANHVLAERR  360
RREKLNERFV ILRSLVPFVT KMDKASILGD TIEYLKQLRR KIQDLEVKTK QMEVEQRSGL  420
TSQERTWSGS GSDKKKMRAV EGTGTPKPVK VVEPPPPRAV EPLAIMDANT VQVSIIETDA  480
LVELQCPHRE GLLLDVMMKL RELRIEVTAV QSSVTDGSFV AELRAKVKEN VNGKKMKIAE  540
VKRAICEIIP Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14353415875Transcription factor MYC2
5gnj_B2e-14353415875Transcription factor MYC2
5gnj_E2e-14353415875Transcription factor MYC2
5gnj_F2e-14353415875Transcription factor MYC2
5gnj_G2e-14353415875Transcription factor MYC2
5gnj_I2e-14353415875Transcription factor MYC2
5gnj_M2e-14353415875Transcription factor MYC2
5gnj_N2e-14353415875Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1357362ERRRRE
2358363RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021279540.11e-173basic helix-loop-helix protein A
SwissprotE3SXU41e-146BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A0C7DWA51e-174A0A0C7DWA5_9MAGN; BHLH3 protein (Fragment)
STRINGEOX947961e-169(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.12e-49bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]