PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0052s0018.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family AP2
Protein Properties Length: 733aa    MW: 80092.1 Da    PI: 6.6333
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0052s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.11.4e-10292348155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  Kalax.0052s0018.1.p 292 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEDKAARAYDLAALKYWG 348
                          57*******************4444.2455535555.7799999*************98 PP
2AP246.68.5e-15391442155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Kalax.0052s0018.1.p 391 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 442
                          57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-8292348IPR001471AP2/ERF domain
CDDcd000184.04E-18292358No hitNo description
SuperFamilySSF541714.05E-14292358IPR016177DNA-binding domain
PROSITE profilePS5103217.016293356IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-11293357IPR001471AP2/ERF domain
SMARTSM003805.3E-22293362IPR001471AP2/ERF domain
PRINTSPR003676.2E-6294305IPR001471AP2/ERF domain
PfamPF008471.1E-9391442IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-17391451IPR016177DNA-binding domain
CDDcd000183.08E-24391450No hitNo description
Gene3DG3DSA:3.30.730.107.2E-18392450IPR001471AP2/ERF domain
PROSITE profilePS5103219.045392450IPR001471AP2/ERF domain
SMARTSM003802.8E-33392456IPR001471AP2/ERF domain
PRINTSPR003676.2E-6432452IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MASMNNWLAF SLSPQHQHQH HQGDQHHSRL QGFHSDDMSA ATDECFDLSS SSARPQPPHP  60
FGVLDEASAD WNSAENGCYK TTTSEMSTLM GSSCNNNSNN GSQSLQDQHL PKLENFLGSH  120
SFSNNHYHHH STAAGDYMFS TESMPETAAH NNNNNQAFNN TNNSIGLSMI KTWLRSNQAA  180
GTGQMQQPLQ QQIPNSNEIF NNNMSSGDGD SGREALCGVD NNNTNNKALT GAQTLSLSMS  240
TGSQSNSSAP LPLLDGGDGV DMQQKTALDS QTGAVVETVP RKSLDTFGQR TSIYRGVTRH  300
RWTGRYEAHL WDNSCRREGQ TRKGRQGGYD KEDKAARAYD LAALKYWGTT TTTNFPISSY  360
EKELEEMKHM TRQEYVASLR RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL  420
GTFSTQEEAA EAYDIAAIKF RGLNAVTNFD MNRYDVNSIL ESSTLPIGGA AKRLKDAEQA  480
IELTGAMEGL ISQRSALNHD SVGSHLSDGM SYGSSGQWPT IAFHHPPYNN AMHQHYSPYA  540
RVWCKQEQDS TSEGTTHQSF QDFHQLQLGS SGATHNFFQQ PTTSVLHNLM SLDSASMEHS  600
SGSNSVIYGN GGGYGASVNN NGGFVMPVGS ALMGNEDNNS EVKASGYATE NIYGNTNAYN  660
QARTLYYLQQ QQQQQSLFKG GGYDQDSGCN SWVPTGIPCS GPKGTGGNTN NTAATCHVAG  720
NQPFTVWNET WK*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023872279.10.0AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ8LSN21e-140BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A2C9USA60.0A0A2C9USA6_MANES; Uncharacterized protein
STRINGcassava4.1_002713m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-131AP2 family protein