PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0051s0112.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

GRAS

Protein Properties

Length: 675aa MW: 74121.8 Da PI: 5.5255

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0051s0112.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	287.3	4.3e-88	309	672	3	373
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn........sseelaalklf 84 +++++ Ae vs g+l laq +Larl+++ sp g+p+qR+a yf+e L+ l+ +++ + +++ +ts+ + +l a+k f Kalax.0051s0112.1.p 309 QQIFKSAELVSMGNLVLAQGILARLNHQLSPIGKPLQRVAYYFKESLQLLLHMISNN-LDVISSATTSTALssfspplsLILKLGAFKSF 397 7899*******************************************998873333.3333333333222345577777888889999 PP GRAS 85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel 172 s++sP+++f+++t NqaIleave ++r+H+iDf+i++G+QW++L+q+La R+ +g sl+iT++ + el t+e+L+ fAeel Kalax.0051s0112.1.p 398 SDISPVVQFANFTSNQAILEAVEMHDRIHVIDFEIGYGGQWASLMQELALRNssGGVISLKITAFIL--CYDDLELGLTRENLSLFAEEL 485 **************************************************767778****9..4499************* PP GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262 +++++ +++ +++l+ + v++gE+++ nl + +++ s + vL+++k+lsPk+vv e+ +d+ + +F++ +++a+e Kalax.0051s0112.1.p 486 NINLDLKIF---GFDMLNSVSHYVSNGEVVVMNLPIGIFSNC--AIS----LPFVLRIIKQLSPKIVVTLERGCDRYDLPFAHNVIQAVE 566 ****9...99999999999*********998887..444....456******************************** PP GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352 ys l +slea +se+ +k+Er++++++i+++v ++ + + + Wr+ + ++GF+p++ls+++++q ++l+++++++g+++e Kalax.0051s0112.1.p 567 SYSNLVESLEAV-NGNSEAFQKIERFMIHPAIEKLVLQRFRI----QDKSPPWRSVFISSGFTPLQLSNFTESQGECLVQRTPVQGFHLE 651 *****987.7899***************987665....8889************************************ PP GRAS 353 eesgslvlgWkdrpLvsvSaW 373 +++ slvl+W++++L+s++aW Kalax.0051s0112.1.p 652 KKQSSLVLCWQQKELISATAW 672 ******************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	39.231	281	653	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-85	309	672	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 675 aa Download sequence Send to blast
MPLPFDIQGK QQQQQQQHLG FLPQDLIATE QQLQWSNTKA EDAGLSQYAA REPTSVLDAR 60 RSPSPPYSSS TLSSSLGSSA SGGAPTPVAS QEPCGGGGVR NNNLDFDQSM FGFILNDNSN 120 AHIDDPSGLS KLISAEPVMP SDLDSLGAIY HPSQHQSGDE FGAFSGNLQE SGFGSGQGSI 180 FGQFGNSLVA SSDIESLFSQ QQHQTIDSLI NHHQHQQPPQ NPSLFLPSGF TDQPIFYLPN 240 PKRLNTGPAL NSDHHQQQNQ IEKNPFLAQN QLQRQVSMMP ASAASSKMIL QPSGRIEEMG 300 MHQQATLFQQ IFKSAELVSM GNLVLAQGIL ARLNHQLSPI GKPLQRVAYY FKESLQLLLH 360 MISNNLDVIS SATTSTALSS FSPPLSLILK LGAFKSFSDI SPVVQFANFT SNQAILEAVE 420 MHDRIHVIDF EIGYGGQWAS LMQELALRNS SGGVISLKIT AFILCYDDLE LGLTRENLSL 480 FAEELNINLD LKIFGFDMLN SVSHYVSNGE VVVMNLPIGI FSNCAISLPF VLRIIKQLSP 540 KIVVTLERGC DRYDLPFAHN VIQAVESYSN LVESLEAVNG NSEAFQKIER FMIHPAIEKL 600 VLQRFRIQDK SPPWRSVFIS SGFTPLQLSN FTESQGECLV QRTPVQGFHL EKKQSSLVLC 660 WQQKELISAT AWGC*

Sequence ? help Back to Top

Protein Sequence Length: 675 aa Download sequence Send to blast

MPLPFDIQGK QQQQQQQHLG FLPQDLIATE QQLQWSNTKA EDAGLSQYAA REPTSVLDAR  60
RSPSPPYSSS TLSSSLGSSA SGGAPTPVAS QEPCGGGGVR NNNLDFDQSM FGFILNDNSN  120
AHIDDPSGLS KLISAEPVMP SDLDSLGAIY HPSQHQSGDE FGAFSGNLQE SGFGSGQGSI  180
FGQFGNSLVA SSDIESLFSQ QQHQTIDSLI NHHQHQQPPQ NPSLFLPSGF TDQPIFYLPN  240
PKRLNTGPAL NSDHHQQQNQ IEKNPFLAQN QLQRQVSMMP ASAASSKMIL QPSGRIEEMG  300
MHQQATLFQQ IFKSAELVSM GNLVLAQGIL ARLNHQLSPI GKPLQRVAYY FKESLQLLLH  360
MISNNLDVIS SATTSTALSS FSPPLSLILK LGAFKSFSDI SPVVQFANFT SNQAILEAVE  420
MHDRIHVIDF EIGYGGQWAS LMQELALRNS SGGVISLKIT AFILCYDDLE LGLTRENLSL  480
FAEELNINLD LKIFGFDMLN SVSHYVSNGE VVVMNLPIGI FSNCAISLPF VLRIIKQLSP  540
KIVVTLERGC DRYDLPFAHN VIQAVESYSN LVESLEAVNG NSEAFQKIER FMIHPAIEKL  600
VLQRFRIQDK SPPWRSVFIS SGFTPLQLSN FTESQGECLV QRTPVQGFHL EKKQSSLVLC  660
WQQKELISAT AWGC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-28	313	672	25	378	Protein SCARECROW
5b3h_A	2e-28	313	672	24	377	Protein SCARECROW
5b3h_D	2e-28	313	672	24	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010661679.1	1e-170	PREDICTED: scarecrow-like protein 27
Swissprot	O81316	1e-122	SCL6_ARATH; Scarecrow-like protein 6
TrEMBL	A0A438GXI9	1e-168	A0A438GXI9_VITVI; Scarecrow-like protein 6
STRING	VIT_15s0048g00270.t01	1e-168	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-121	GRAS family protein

Link Out ? help Back to Top
Phytozome	Kalax.0051s0112.1.p

Publications ? help Back to Top
Bari A,Orazova S,Ivashchenko A miR156- and miR171-binding sites in the protein-coding sequences of several plant genes. Biomed Res Int, 2013. 2013: p. 307145 [PMID:23936788] Xue XY, et al. Interaction between two timing microRNAs controls trichome distribution in Arabidopsis. PLoS Genet., 2014. 10(4): p. e1004266 [PMID:24699192]