PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0051s0105.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 466aa    MW: 51408.6 Da    PI: 6.2688
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0051s0105.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS286.66.8e-88514572373
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsP 89 
                          ++lLl+cA a++ +d +laq++++ l++ asp gdp+qRl++ f++AL +r +r +++ +  l++s+t    + + l+ ++l  ++++ P
  Kalax.0051s0105.1.p  51 EKLLLHCASALEINDVTLAQQVMWVLNNVASPVGDPNQRLTSWFLRALISRASRVCPTPMGNLNTSSTL---QRRLLSGTELagYVDLIP 137
                          689***************************************************999888888877776...344444444456****** PP

                 GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpf 176
                          +++f++ +aN+aI++av+g  r+Hi+Df+i++++QWp+L++aLa+RpegppslRi +     ++    + ++  +g rL +fA+  ++pf
  Kalax.0051s0105.1.p 138 WHRFGFCAANSAIYKAVQGYPRIHILDFSITHCMQWPTLIDALAKRPEGPPSLRISVPCTRPHVpplLNVSIDDIGIRLGNFARCRNIPF 227
                          ********************************************************96664444789999******************** PP

                 GRAS 177 efnvl.........................vak.rledleleeLrvkpgEalaVnlvlqlhrll..........desvsles.....erd 225
                          ef+v+                           +  l++l++++L+++ +E+l+Vn++  l +l+                 +      rd
  Kalax.0051s0105.1.p 228 EFDVMncsssssgansiemttnnskelltfNIDfLLDCLSPHALNLRDDEVLVVNCQSWLRYLPdgqlknstnhI------HeascsIRD 311
                          *****9999999999998887777776655333367777899999999999999999999999977666555431......023334689 PP

                 GRAS 226 evLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315
                          ++L+l++sl+P+++++v+++ad+ns+s+  r++ +++y +  fd+le+ lp+es++ri +E+  +g +i++++ ceg++r+er e+  + 
  Kalax.0051s0105.1.p 312 TFLELLRSLNPHIMIIVDEDADLNSTSLTSRIATCFNYLWIPFDALETFLPKESSQRIEYEAD-IGHKIESIIGCEGFHRIERLESSLNM 400
                          ***************************************************************.************************** PP

                 GRAS 316 rerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                          ++r+++aGF +vp+se+++k++klll +++  g+ ++ ++++l+l+Wk+++ v +S W
  Kalax.0051s0105.1.p 401 SQRIKTAGFLSVPFSEETVKDVKLLLDEHA-SGWGMKRDDDALILTWKGHNSVYASTW 457
                          ******************************.899************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.55824439IPR005202Transcription factor GRAS
PfamPF035142.3E-8551457IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MKSEPRGSTA PISLPSHGLL SPSSTSSSSS SNSLPGALKG CLGSLDGACI EKLLLHCASA  60
LEINDVTLAQ QVMWVLNNVA SPVGDPNQRL TSWFLRALIS RASRVCPTPM GNLNTSSTLQ  120
RRLLSGTELA GYVDLIPWHR FGFCAANSAI YKAVQGYPRI HILDFSITHC MQWPTLIDAL  180
AKRPEGPPSL RISVPCTRPH VPPLLNVSID DIGIRLGNFA RCRNIPFEFD VMNCSSSSSG  240
ANSIEMTTNN SKELLTFNID FLLDCLSPHA LNLRDDEVLV VNCQSWLRYL PDGQLKNSTN  300
HIHEASCSIR DTFLELLRSL NPHIMIIVDE DADLNSTSLT SRIATCFNYL WIPFDALETF  360
LPKESSQRIE YEADIGHKIE SIIGCEGFHR IERLESSLNM SQRIKTAGFL SVPFSEETVK  420
DVKLLLDEHA SGWGMKRDDD ALILTWKGHN SVYASTWVPN GSLRD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B1e-55184601421Protein SHORT-ROOT
5b3h_E1e-55184601421Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275420.10.0PREDICTED: scarecrow-like protein 32
TrEMBLA0A067DY510.0A0A067DY51_CITSI; Uncharacterized protein
STRINGVIT_12s0059g02770.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-120GRAS family protein