PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0051s0101.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 334aa MW: 37514.5 Da PI: 6.5633 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.2 | 6.9e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +l ++++++G g+W+t ++ g+ R++k+c++rw +yl Kalax.0051s0101.1.p 14 KGPWTADEDVKLREYIERHGAGNWRTLPQNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55 | 1.9e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ +lG++ W++Ia++++ gRt++++k++w+++ Kalax.0051s0101.1.p 67 RGRFSFEEEEAIIQLHSLLGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-23 | 7 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.302 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.05E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.8E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.97E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.783 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.7E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.1E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.04E-13 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MGRAPASSSS GLKKGPWTAD EDVKLREYIE RHGAGNWRTL PQNAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEEAIIQ LHSLLGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG 120 LDPVTHAPRL HHLPHSTSHL NDNLSNLLFF LNQQQQMVNP QLLNIATTLL ALNQQPNQTL 180 FNDNSTHVSE DAERFDAYAL QIHDHQFQPY NSSSFLQSNN QHAGGFSTSS SMDDLSAHES 240 WYGFSSNHVG GCSQMLLPPL VHDEKAAATS SSFGSLNNNQ QQQQMSTYTA ATPFTSYTSS 300 PLDSSYTSNG FSTEDEIDSI LNFEIPDLTE LLY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007148253.1 | 8e-95 | hypothetical protein PHAVU_006G192900g | ||||
Swissprot | Q9LDR8 | 7e-88 | MY102_ARATH; Transcription factor MYB102 | ||||
TrEMBL | V7BQH6 | 2e-93 | V7BQH6_PHAVU; Uncharacterized protein | ||||
STRING | XP_007148253.1 | 3e-94 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 8e-83 | MYB-like 102 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0051s0101.1.p |
Publications ? help Back to Top | |||
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