PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0051s0099.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 351aa MW: 39204.7 Da PI: 6.3422 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd +l ++++++G+g+W+t ++ g+ R++k+c++rw +yl Kalax.0051s0099.1.p 14 KGPWTSEEDYKLSQYIEEHGPGNWRTLPKLAGLERCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.6 | 5.3e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ Kalax.0051s0099.1.p 67 RGRFSFEEEETIIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.8E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.559 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.09E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.43E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.137 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.8E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.83E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MGRAPCCQKN GLKKGPWTSE EDYKLSQYIE EHGPGNWRTL PKLAGLERCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEETIIQ LHSVLGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG 120 LDPVTHTPKL DHLIGSSSQL NILSNLLLAL NQQQQQQQLL NPQLLTIVAS LLTPLGQPIP 180 QNQVVFGNNN ISEQPQYQTS WQQQQLNADQ SNSIIDNNPS VLFQPHNYSS SSLMSHQQPQ 240 LNVAMQPNDN GGEKGFLSAE MVGCGFEVAS GDHNQQMTQG LLEQTTTYPA GLSSHDQQFS 300 FNSISSTALS TSLSSSPLNS SFTNNGLNHD DCTSFFNFEI PEGYDMSELL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 2e-29 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-29 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023531401.1 | 2e-97 | transcription factor MYB41-like | ||||
Swissprot | Q9LDR8 | 1e-92 | MY102_ARATH; Transcription factor MYB102 | ||||
TrEMBL | A0A1S3VI66 | 2e-94 | A0A1S3VI66_VIGRR; transcription factor MYB102-like | ||||
TrEMBL | A0A4D6N9M9 | 4e-95 | A0A4D6N9M9_VIGUN; Myb proto-oncogene protein | ||||
STRING | XP_010095853.1 | 7e-95 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 4e-86 | MYB-like 102 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0051s0099.1.p |
Publications ? help Back to Top | |||
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