PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0051s0085.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 334aa    MW: 37249.5 Da    PI: 7.6243
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0051s0085.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.6e-18118167255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+g
  Kalax.0051s0085.1.p 118 LYRGVRQRH-WGKWVAEIRLPRD---RTRLWLGTFDTAEDAAMAYDRQAFKLRG 167
                          59******9.**********966...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.54E-33117176No hitNo description
SMARTSM003801.4E-38118181IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-32118176IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-23118176IPR016177DNA-binding domain
PROSITE profilePS5103222.906118175IPR001471AP2/ERF domain
PRINTSPR003674.8E-11119130IPR001471AP2/ERF domain
PfamPF008474.9E-12119167IPR001471AP2/ERF domain
PRINTSPR003674.8E-11141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDRYGRSPDR QNPFQFHQGQ QIPLHPSSSA SRSVFPFALD ASQLQFRQQQ QQHCSIAYYP  60
PQTLQQQQQQ ELLNGDLATM GAALTPQHHQ MLIMMNRVGV QEKTNSLLRP QPINTTKLYR  120
GVRQRHWGKW VAEIRLPRDR TRLWLGTFDT AEDAAMAYDR QAFKLRGQNA RLNFPERFLN  180
KETLISTAPT SPSSTPAGSN PAPNSSHKLE EPCKEEEPNL SQVANNATGA NTNECVADKN  240
EFVWGDMAEA WFNTIPAGRC PGSPISDNLE TTNHLLLLPN PLPSSAFGQH NDIAELSTAC  300
ELRRQLNNLG AASSISSSSS NSFSFLWKDP HST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-21117177162ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-21117177465ATERF1
3gcc_A6e-21117177465ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022764049.15e-71ethylene-responsive transcription factor ERF054-like
TrEMBLA0A1U8MAV15e-69A0A1U8MAV1_GOSHI; ethylene-responsive transcription factor ERF054-like
TrEMBLA0A2P5XGY55e-69A0A2P5XGY5_GOSBA; Uncharacterized protein
STRINGGorai.008G153600.11e-68(Gossypium raimondii)
STRINGEOX993823e-68(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.13e-43ERF family protein