PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0049s0102.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 355aa    MW: 37661 Da    PI: 7.9061
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0049s0102.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.73e-1854103255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aa+a+++a++ l+g
  Kalax.0049s0102.1.p  54 RYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFSTAEDAARAYDRAALVLYG 103
                          59****999.**********954...5**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-1254103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-3054111IPR001471AP2/ERF domain
PROSITE profilePS5103222.72154111IPR001471AP2/ERF domain
CDDcd000186.15E-2154113No hitNo description
SuperFamilySSF541715.56E-2154112IPR016177DNA-binding domain
SMARTSM003801.4E-3854117IPR001471AP2/ERF domain
PRINTSPR003671.9E-105566IPR001471AP2/ERF domain
PRINTSPR003671.9E-107793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006970Biological Processresponse to osmotic stress
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009744Biological Processresponse to sucrose
GO:0009749Biological Processresponse to glucose
GO:0010119Biological Processregulation of stomatal movement
GO:0010353Biological Processresponse to trehalose
GO:0010449Biological Processroot meristem growth
GO:0010896Biological Processregulation of triglyceride catabolic process
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0032880Biological Processregulation of protein localization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MNPNLPLSNP NTEENNNSNG SSCSNSNNNT DINDSCKSNK CGKGKGGPDN NKFRYRGVRQ  60
RSWGKWVAEI REPRKRTRKW LGTFSTAEDA ARAYDRAALV LYGSRAQLNL QPSSPNAGAA  120
ASSRASSSSR ATSSSSSSST QTQLRPLLPR PPTGFNYAAF PIQPAPTAQP GSSHHQNPAA  180
FSVLSAAPSA YVPYGLYGPS LVFPNAAATN HSNSKLGHQQ QHQVTTYQSL HPFPDPNNNH  240
TCTEPVAGKD RMATVTATPT TSYSNPNSKE EVRLGNNGDG TMSYEEINSL VGSLCSNSDQ  300
GVGVGPVGQS VSDPLAVVGS GPDQDLWPSF GGEDGIPATS FWDYGQADPF LFDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1855110359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00674SELEXTransfer from GRMZM2G093595Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.12e-26ERF family protein