PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0049s0061.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 535aa    MW: 59431.6 Da    PI: 8.068
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0049s0061.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS417.11.6e-1271645341374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++ L++cA a+s+++  +aq l+a+l++++s +g+p+qRl ay++e+L a+ ++ +s++yk l+++e +   ss+ ++++++++ev+P+
  Kalax.0049s0061.2.p 164 LRQGLVDCALAISEDNRPKAQYLIAELEQMVSVSGEPIQRLGAYVLEGLIAKFNSAGSSIYKVLKCKEPA---SSDLFSYMHILYEVCPY 250
                          5788*****************************************************************9...99*************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          +kf+++ aN aI ea++ e rvHiiDf i+qG QW++L++a+a+Rp+gpp++RiT ++++ s   +     ++g+rL+k+A++++vpfef
  Kalax.0049s0061.2.p 251 FKFGYMSANGAIAEAMKDEYRVHIIDFRIGQGSQWLTLIRAFAARPGGPPHIRITSIEDSISAyaRGGGQGAVGKRLSKLAQSFKVPFEF 340
                          ***********************************************************8777878888999****************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          +   ++++e  +  +L ++pgEalaVn+++ lh+l+desvs++++rd++L+lvk+lsPkvv++veqe+++n++ F+ rfle+++yy+a+f
  Kalax.0049s0061.2.p 341 HSASMSDCE-SQQVNLGIRPGEALAVNFAFILHHLPDESVSTHNHRDRLLRLVKGLSPKVVTLVEQESNTNTAAFFPRFLETMSYYTAMF 429
                          **5444444.456689************************************************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          +s++a+lpr++++ri vE+++l++++vn++acegaer++rhe l+kW++r+ +aGFkp+pls+ +++++k+ll+k++++ y++ee++g++
  Kalax.0049s0061.2.p 430 ESIDATLPRNHKDRIHVEQHCLAKDVVNIIACEGAERVKRHELLGKWKSRFAMAGFKPYPLSSLVNATIKALLEKYSDK-YKLEERDGAV 518
                          *****************************************************************************55.********** PP

                 GRAS 359 vlgWkdrpLvsvSaWr 374
                          + gW++r+Lv  +aW+
  Kalax.0049s0061.2.p 519 YRGWMNRALVGSCAWT 534
                          ***************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.701138515IPR005202Transcription factor GRAS
PfamPF035145.4E-125164534IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MSKRSYRKSM PEAHTYLVPQ LHQLDHQLYC NDSNPSARFT IQNPNGGRVL IPATYARYCT  60
LESSSTARSS NNASSVSFSD GSPLSQQDCS SYQLDPHQVL EKGYGSPISG SCLTDDKHEL  120
RNKLMELETV MLGPDSDVID RSGVASPGID SWRQMMGIAS KQDLRQGLVD CALAISEDNR  180
PKAQYLIAEL EQMVSVSGEP IQRLGAYVLE GLIAKFNSAG SSIYKVLKCK EPASSDLFSY  240
MHILYEVCPY FKFGYMSANG AIAEAMKDEY RVHIIDFRIG QGSQWLTLIR AFAARPGGPP  300
HIRITSIEDS ISAYARGGGQ GAVGKRLSKL AQSFKVPFEF HSASMSDCES QQVNLGIRPG  360
EALAVNFAFI LHHLPDESVS THNHRDRLLR LVKGLSPKVV TLVEQESNTN TAAFFPRFLE  420
TMSYYTAMFE SIDATLPRNH KDRIHVEQHC LAKDVVNIIA CEGAERVKRH ELLGKWKSRF  480
AMAGFKPYPL SSLVNATIKA LLEKYSDKYK LEERDGAVYR GWMNRALVGS CAWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-5617153426379Protein SCARECROW
5b3h_A1e-5617153425378Protein SCARECROW
5b3h_D1e-5617153425378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021675700.10.0scarecrow-like transcription factor PAT1
RefseqXP_021675701.10.0scarecrow-like transcription factor PAT1
RefseqXP_021675702.10.0scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A438DQ250.0A0A438DQ25_VITVI; Scarecrow-like transcription factor PAT1
STRINGPOPTR_0014s16230.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]