PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0049s0043.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 189aa    MW: 20557 Da    PI: 8.653
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0049s0043.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.58e-191666155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++++GVr++  +gr++AeIrdp++   ++r++lg+f++ae+Aa+a++aa+ +++g
  Kalax.0049s0043.1.p 16 PRFRGVRRRT-WGRFAAEIRDPVK---KARVWLGTFDSAEDAARAYDAAAVSFRG 66
                         689****877.**********654...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.13E-171676No hitNo description
PfamPF008477.8E-121666IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-221776IPR016177DNA-binding domain
SMARTSM003801.3E-351780IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-311775IPR001471AP2/ERF domain
PROSITE profilePS5103223.5651774IPR001471AP2/ERF domain
PRINTSPR003671.1E-91829IPR001471AP2/ERF domain
PRINTSPR003671.1E-94056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MVKEKSVAAA TPKSEPRFRG VRRRTWGRFA AEIRDPVKKA RVWLGTFDSA EDAARAYDAA  60
AVSFRGSKAK TNFPSSVPSP PVHREDFLPH QHRPTSSGMS STVESFNGPR ASNPGLLMAR  120
KFSAVAVREE GDCRSDCDSS SSVIDYCEGA GDDGDFSCSK VLSFDLNLPP PSDAALEVFS  180
RRKVIEIW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-211879668ATERF1
3gcc_A6e-211879668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020694474.17e-45ethylene-responsive transcription factor 3
SwissprotO803392e-28ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A0V0HV082e-45A0A0V0HV08_SOLCH; Putative ethylene-responsive transcription factor 3-like
STRINGGorai.002G092900.13e-38(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.12e-11ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]