PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0048s0128.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GRF | ||||||||
Protein Properties | Length: 332aa MW: 36927 Da PI: 8.6669 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 74.4 | 1.2e-23 | 88 | 132 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CE+H+hrg++rsrk++e+ Kalax.0048s0128.2.p 88 DQEPGRCRRTDGKKWRCSKEAFQDSKYCEKHMHRGKNRSRKPVEQ 132 689***************************************997 PP | |||||||
2 | QLQ | 48.2 | 3.3e-17 | 22 | 56 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +F+a+Q+q+L Q+l++K++a+++PvPp+Ll+ i+ Kalax.0048s0128.2.p 22 PFSASQWQELGEQALIFKHMASGVPVPPDLLFTIR 56 8******************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 9.5E-9 | 21 | 57 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.4E-12 | 22 | 56 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 19.459 | 22 | 57 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.09 | 88 | 132 | IPR014977 | WRC domain |
Pfam | PF08879 | 9.8E-20 | 90 | 131 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MIMNGRASAG AGGVNGGGCR FPFSASQWQE LGEQALIFKH MASGVPVPPD LLFTIRRSLD 60 SNKLFAHPAA APHIGWNGFE MGLGRKIDQE PGRCRRTDGK KWRCSKEAFQ DSKYCEKHMH 120 RGKNRSRKPV EQQVVNKSNA ITLTTNCSKS HQSSSVASDN HVSPRACAYY NISHPYHLHS 180 SSSSNSRFDS THIRLHSASY YRSRYDGSSN HGSVLKEVVD EQSQSQSLLN EDSVKGLSSN 240 SWHLTPLTIG MSHQMNDELQ EASRCELMTP DDQQQTHKTV YTFLEERPPD KKDSSWLNHD 300 DKSSDSSTAQ LLISIPPATS HHVFPIFNSK S* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00263 | DAP | Transfer from AT2G06200 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018844330.1 | 1e-73 | PREDICTED: growth-regulating factor 1 isoform X1 | ||||
Refseq | XP_024445834.1 | 2e-73 | growth-regulating factor 1 isoform X1 | ||||
TrEMBL | A0A2I4GKA5 | 2e-72 | A0A2I4GKA5_JUGRE; growth-regulating factor 1 isoform X1 | ||||
TrEMBL | A0A2K1WWV8 | 4e-72 | A0A2K1WWV8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s07140.1 | 8e-73 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G06200.1 | 7e-49 | growth-regulating factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0048s0128.2.p |