PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0048s0128.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRF
Protein Properties Length: 332aa    MW: 36927 Da    PI: 8.6669
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0048s0128.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.41.2e-2388132145
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                          d+epgrCrRtDGKkWRCs+++ +++k+CE+H+hrg++rsrk++e+
  Kalax.0048s0128.1.p  88 DQEPGRCRRTDGKKWRCSKEAFQDSKYCEKHMHRGKNRSRKPVEQ 132
                          689***************************************997 PP
2QLQ48.23.3e-172256236
                  QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                         +F+a+Q+q+L  Q+l++K++a+++PvPp+Ll+ i+
  Kalax.0048s0128.1.p 22 PFSASQWQELGEQALIFKHMASGVPVPPDLLFTIR 56
                         8******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009519.5E-92157IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.4E-122256IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.4592257IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.0988132IPR014977WRC domain
PfamPF088799.8E-2090131IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MIMNGRASAG AGGVNGGGCR FPFSASQWQE LGEQALIFKH MASGVPVPPD LLFTIRRSLD  60
SNKLFAHPAA APHIGWNGFE MGLGRKIDQE PGRCRRTDGK KWRCSKEAFQ DSKYCEKHMH  120
RGKNRSRKPV EQQVVNKSNA ITLTTNCSKS HQSSSVASDN HVSPRACAYY NISHPYHLHS  180
SSSSNSRFDS THIRLHSASY YRSRYDGSSN HGSVLKEVVD EQSQSQSLLN EDSVKGLSSN  240
SWHLTPLTIG MSHQMNDELQ EASRCELMTP DDQQQTHKTV YTFLEERPPD KKDSSWLNHD  300
DKSSDSSTAQ LLISIPPATS HHVFPIFNSK S*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00263DAPTransfer from AT2G06200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018844330.11e-73PREDICTED: growth-regulating factor 1 isoform X1
RefseqXP_024445834.12e-73growth-regulating factor 1 isoform X1
TrEMBLA0A2I4GKA52e-72A0A2I4GKA5_JUGRE; growth-regulating factor 1 isoform X1
TrEMBLA0A2K1WWV84e-72A0A2K1WWV8_POPTR; Uncharacterized protein
STRINGPOPTR_0018s07140.18e-73(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G06200.17e-49growth-regulating factor 6