PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0047s0015.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Dof

Protein Properties

Length: 468aa MW: 50038.3 Da PI: 8.5928

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0047s0015.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.5	1.7e-39	123	182	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprCds++tkfCyynny++ qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k+s Kalax.0047s0015.1.p 123 PDKVLPCPRCDSMDTKFCYYNNYNVLQPRHFCKGCQRYWTAGGAMRNVPVGAGRRKSKNS 182 78999****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-29	120	180	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.1E-32	124	181	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.463	127	181	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	129	165	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MTQLKDPAIR LFGKSIPFYS ASSGGADESG GASAAASCSE TDRASSGGFE IGQSDKEKVL 60 EARAVKGLKQ QSEDESVTGS VSLETDENQK KPSVDEETGN GKAGSSNMTE EANSKAKTPL 120 KKPDKVLPCP RCDSMDTKFC YYNNYNVLQP RHFCKGCQRY WTAGGAMRNV PVGAGRRKSK 180 NSVLHNRYLA ISEAIHGSGA VSPVGMVPGL PGLKCGSVLT VGSDATVSAS ICSVPDVKEM 240 PFLDHGRNLT RKVTEQVVTK SHKVGEITSS GSCVTASNET ESKEPGHTSF THSFNGCLAQ 300 IPCIPAWPYP WNVAIPPPAF PHPGFALPLV PPTYWPYASI PHTWHGPWVT PQPLSQTNTD 360 AGGNPKPKPP LLGKHSRDGE VLPKNSSAKQ ASVLTPKTLR IDHPEEAAKS SIWETLGIKN 420 ETVSKGGLFR DLKSKDADNI KFVPENYSHL SSNPAALSRS MKFHEVS*

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MTQLKDPAIR LFGKSIPFYS ASSGGADESG GASAAASCSE TDRASSGGFE IGQSDKEKVL  60
EARAVKGLKQ QSEDESVTGS VSLETDENQK KPSVDEETGN GKAGSSNMTE EANSKAKTPL  120
KKPDKVLPCP RCDSMDTKFC YYNNYNVLQP RHFCKGCQRY WTAGGAMRNV PVGAGRRKSK  180
NSVLHNRYLA ISEAIHGSGA VSPVGMVPGL PGLKCGSVLT VGSDATVSAS ICSVPDVKEM  240
PFLDHGRNLT RKVTEQVVTK SHKVGEITSS GSCVTASNET ESKEPGHTSF THSFNGCLAQ  300
IPCIPAWPYP WNVAIPPPAF PHPGFALPLV PPTYWPYASI PHTWHGPWVT PQPLSQTNTD  360
AGGNPKPKPP LLGKHSRDGE VLPKNSSAKQ ASVLTPKTLR IDHPEEAAKS SIWETLGIKN  420
ETVSKGGLFR DLKSKDADNI KFVPENYSHL SSNPAALSRS MKFHEVS*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-72	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	Kalax.0047s0015.1.p