PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0046s0069.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 148aa    MW: 16138.4 Da    PI: 9.1761
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0046s0069.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.21.1e-182155135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C+ Cgt+kTplWR gp g+k+LCnaCG++ rk+++
  Kalax.0046s0069.1.p 21 CVDCGTSKTPLWRGGPAGPKSLCNACGIRSRKRRR 55
                         ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.2E-121566IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-131860No hitNo description
Gene3DG3DSA:3.30.50.102.1E-151954IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.52E-122155No hitNo description
PROSITE patternPS0034402146IPR000679Zinc finger, GATA-type
PfamPF003202.0E-162155IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.1762151IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MVSGMMDDGS ECGGLASKKL CVDCGTSKTP LWRGGPAGPK SLCNACGIRS RKRRRALLES  60
TEADENKKKM IGKKMKHMIN SNSDSNGSHN SSSSSSSNNG HLECSRKDRL TAMWDILKPR  120
KVRMEELNEE QEAAVLLMAM SHGYDRC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15054RKRRR
25275RRRALLESTEADENKKKMIGKKMK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.11e-21GATA transcription factor 15