PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0046s0065.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 722aa    MW: 80951.9 Da    PI: 5.2425
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0046s0065.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.81.4e-193682148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g WT+eEde l +av+ + g++Wk+Ia+++g gRt+ qc +rwqk+l
  Kalax.0046s0065.1.p 36 KGQWTAEEDETLRKAVEHYNGKSWKKIAECLG-GRTDVQCLHRWQKVL 82
                         799*****************************.************986 PP
2Myb_DNA-binding55.61.2e-1788134148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+WT+eEde+++++v + G   W+ Ia++++ gR +kqc++rw+ +l
  Kalax.0046s0065.1.p  88 KGPWTKEEDEKIIELVGKNGATKWTNIAKHLP-GRIGKQCRERWYHHL 134
                          79******************************.************886 PP
3Myb_DNA-binding47.25e-15140182145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          + +WT+eE++ l++a++ +G++ W+   + ++ gR+++ +k++w+
  Kalax.0046s0065.1.p 140 KENWTQEEELTLIHAHRIYGNK-WAELTKFLP-GRSDNAIKNHWN 182
                          679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.2773182IPR017930Myb domain
SMARTSM007173.2E-163584IPR001005SANT/Myb domain
PfamPF002494.2E-173682IPR001005SANT/Myb domain
SuperFamilySSF466892.73E-163792IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-203790IPR009057Homeodomain-like
CDDcd001672.03E-143982No hitNo description
PROSITE profilePS5129430.34383138IPR017930Myb domain
SuperFamilySSF466892.26E-2986181IPR009057Homeodomain-like
SMARTSM007172.6E-1787136IPR001005SANT/Myb domain
CDDcd001673.84E-1590134No hitNo description
Gene3DG3DSA:1.10.10.602.1E-2591142IPR009057Homeodomain-like
PfamPF139216.1E-1791149No hitNo description
SMARTSM007172.5E-14139187IPR001005SANT/Myb domain
PROSITE profilePS5129419.474139189IPR017930Myb domain
CDDcd001676.97E-11142182No hitNo description
Gene3DG3DSA:1.10.10.601.9E-19143188IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MATGREVAIS EGGSSDGSSK KRPANRVSGP SRRSTKGQWT AEEDETLRKA VEHYNGKSWK  60
KIAECLGGRT DVQCLHRWQK VLDPALIKGP WTKEEDEKII ELVGKNGATK WTNIAKHLPG  120
RIGKQCRERW YHHLDPAIKK ENWTQEEELT LIHAHRIYGN KWAELTKFLP GRSDNAIKNH  180
WNSSVKKKEE SFMAAGLLSN FPCVPDFGQQ KLSVAFSSTQ QTSGENSHMR GGSEEDGVSE  240
CSQASTTLGC SQTSNDLTIK VESLNPIQEC HKNSLVNENH SLSCNVGLDE IGDPMLSQSS  300
HIQISQANET SDLPSNDPAS DYLDIPSFEH LFYDEPNQCQ NSFPETQGQE FYQSSHDDFS  360
YINQYDMNPT EIASENKVVY EESESGSHRI HAMAKSPDKS QCCTPMEVQP ALVHGEKINN  420
GGAAYYEPPH LTNLDIPFVS CDLVQSGDFL EEEYSPLGIR QLLLMNSFSP LRLWDDSPEA  480
GLKSATKTFT RTPSILKKRH RDLLSPLSEK RVDKKQDSEP EQSSFSGLAQ DTSQFNDDRK  540
ENFDPVLKTD EKDQTEGLSC ERVLEDINRD PKAHLDANDA THAVHQSSED LADKEIEKLI  600
LFSPRVQIQA EKELYAKGYL NLTALPGNST ESDRYTANEI ISFHTHSLTP RSRGIMVKKP  660
FIDADSDKSS RSEGTPFKIF FESPTLDSPL FAKLFLPGPR IDTDISIEDI GYLHYPRQQI  720
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-64361886158MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-64361886158MYB PROTO-ONCOGENE PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049083.11e-109PREDICTED: myb-related protein 3R-1 isoform X1
RefseqXP_018726739.11e-109PREDICTED: myb-related protein 3R-1 isoform X2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.11e-96Homeodomain-like protein