PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0044s0090.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | TALE | ||||||||
Protein Properties | Length: 686aa MW: 75574.6 Da PI: 6.8785 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.7 | 2.3e-09 | 484 | 521 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Kalax.0044s0090.1.p 484 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 521 664559******************************88 PP | |||||||
2 | BELL | 122.8 | 1.4e-39 | 344 | 415 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 er e+q+kk+kLl +l+eVd+rY++y+eq+q+v++sF+ v+g gsa pYt+lA+ka+SrhFrcLkdaia q+ Kalax.0044s0090.1.p 344 ERVEHQRKKVKLLAMLDEVDRRYNHYCEQMQMVVNSFDLVMGFGSAVPYTALAQKAMSRHFRCLKDAIAAQL 415 688******************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.5E-72 | 260 | 413 | IPR006563 | POX domain |
Pfam | PF07526 | 4.3E-52 | 265 | 412 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.503 | 462 | 525 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.64E-12 | 465 | 526 | No hit | No description |
SMART | SM00389 | 1.2E-9 | 465 | 529 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.12E-17 | 466 | 532 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.9E-29 | 468 | 531 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.4E-18 | 482 | 521 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 686 aa Download sequence Send to blast |
MSQDYHHQEN IYSFSNGFER SEQQQILREK LGGGGGFPAP DENSGTGIPT VYETAGMLSE 60 MFSYPSGVSS ATQLLQQMGP PGFQDSREVQ PPAIQEWYTD RKDPNILEFR DVSTSDSAHH 120 HHQQQHHQRQ HHQQHQMTAI SVADSAAAAM QLFIMNPQSR SSTSPGQASA PPHSNTLHML 180 LPNNPNSGEF DTWGGGGEAQ GLSLSLASSL EAAKAEQFFF TQNHHHQQLQ QQQQTLHFNH 240 QMNNGLFVGP STSSPSSSSL TAMNMLRNSK YAKPTQELLE EFCSVGRGHF KKTKFRNNNN 300 NANPNNPNQT PPPEAAGSGG AGGASSSSTK EGSTAPPPPL SAAERVEHQR KKVKLLAMLD 360 EVDRRYNHYC EQMQMVVNSF DLVMGFGSAV PYTALAQKAM SRHFRCLKDA IAAQLKHSCE 420 LLGEKDPAAG GGVTKGETPR LRILEQSLRQ QRAFHQMGMM ETEAWRPQRG LPERSVNILR 480 AWLFEHFLHP YPSDADKHLL ARQTGLSRNQ VSNWFINARV RLWKPMVEEM YQQEAKEEEA 540 SVNPDNNNKN SNEDMNDQDD LLDPSPRQND PAPIHHYTSA SEQHHTGASS RFSVIPQQGP 600 NMVMSAAAAA PQGYYHQRFH VEMMGADDPR RRDIGGSSAG TSGGFIGGGP GLIRFGTTTT 660 AGDVSLTLGL RQHSGNLPEK NSFFG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-16 | 471 | 529 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-16 | 471 | 529 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012079108.1 | 0.0 | BEL1-like homeodomain protein 2 | ||||
Refseq | XP_012079109.1 | 0.0 | BEL1-like homeodomain protein 2 | ||||
Swissprot | Q94KL5 | 1e-149 | BLH4_ARATH; BEL1-like homeodomain protein 4 | ||||
TrEMBL | A0A067KJ17 | 0.0 | A0A067KJ17_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_023603m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23760.3 | 1e-132 | BEL1-like homeodomain 4 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0044s0090.1.p |
Publications ? help Back to Top | |||
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