PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0044s0064.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GRAS | ||||||||
Protein Properties | Length: 517aa MW: 57609.3 Da PI: 6.0843 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 272.2 | 1.7e-83 | 160 | 515 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 ve L+++A +++sg+l+la+a+L+rl+++ +sp g+p+qR+a+yf+eAL++ l+ +ps+ s + +e++ a+k+fs +sPi Kalax.0044s0064.1.p 160 VEELIRAAGCFDSGELQLAHAMLSRLNQRlRSPLGKPLQRAAFYFKEALNSLLSV-------PTRPSRPSILEIVESIRAHKAFSSISPI 242 689*************************99*********************9998.......444455555669**************** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176 + fs + +Nqa+le++e+++ vHi+Df+i+ G+Q+++L++++a+R+ ++ +RiT+++++e ++e + ++++L +fA+ l+++f Kalax.0044s0064.1.p 243 PMFSDFSTNQAVLESIESSTFVHIVDFEIGLGGQYASLMREIADRSvsskQSRVAIRITAIVEEE--FEKESRLVRDNLCQFAHDLQIRF 330 **********************************************876444569********66..889999***************** PP GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyy 264 +++++ +++e+l+ +++++ +E+++V+l +r +++ ++ + P+ vv+v +e + h++ sF + f+e leyy Kalax.0044s0064.1.p 331 RIDFVSLRSFEMLSEKSIDFTDDEKTIVHLTPVTFRRT---------GAKFVIDLRLVVPNAVVLVTSEewMTHETVSFRRSFVEGLEYY 411 ****9999***********************9888876.........3469999********999988878999**************** PP GRAS 265 salfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353 s+l++sl+a ++ e+ +k+E+++l+r+iv v + g + +Wre+l+ aG++p+ ls a+ qa++l+rk +++g++v Kalax.0044s0064.1.p 412 SVLLESLDAAAAVGGgEWVKKIEAFVLRRRIVAEVETMGGK-------TTSWREMLGGAGMRPAGLSRLAEFQAECLVRKGEVRGFHVGT 494 *******87776666699*****************999998.......789*************************************** PP GRAS 354 esgslvlgWkdrpLvsvSaWr 374 ++g+lvl W++rpLv++S Wr Kalax.0044s0064.1.p 495 RHGELVLSWHGRPLVATSTWR 515 ********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 34.126 | 133 | 495 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.8E-81 | 160 | 515 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0048831 | Biological Process | regulation of shoot system development |
Sequence ? help Back to Top |
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Protein Sequence Length: 517 aa Download sequence Send to blast |
MRFPALTPHS AAHLSSSFIP NTAPSSTANF CFEPTSVLDL RRSPSPVHDH FPTTSISDVL 60 SQTEDLSLLP SINDHHQQAA VHNLDDWDSI MRELGLHDDF APSALKAITF PPHHSPSSES 120 GLTQFHDLAS SAIPNPDQPL FSPSDLEFTD WNTSVGFDFV EELIRAAGCF DSGELQLAHA 180 MLSRLNQRLR SPLGKPLQRA AFYFKEALNS LLSVPTRPSR PSILEIVESI RAHKAFSSIS 240 PIPMFSDFST NQAVLESIES STFVHIVDFE IGLGGQYASL MREIADRSVS SKQSRVAIRI 300 TAIVEEEFEK ESRLVRDNLC QFAHDLQIRF RIDFVSLRSF EMLSEKSIDF TDDEKTIVHL 360 TPVTFRRTGA KFVIDLRLVV PNAVVLVTSE EWMTHETVSF RRSFVEGLEY YSVLLESLDA 420 AAAVGGGEWV KKIEAFVLRR RIVAEVETMG GKTTSWREML GGAGMRPAGL SRLAEFQAEC 480 LVRKGEVRGF HVGTRHGELV LSWHGRPLVA TSTWRY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 6e-20 | 165 | 514 | 24 | 377 | Protein SCARECROW |
5b3h_D | 6e-20 | 165 | 514 | 24 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028076229.1 | 1e-165 | scarecrow-like protein 15 | ||||
Swissprot | O23210 | 1e-137 | SCL15_ARATH; Scarecrow-like protein 15 | ||||
TrEMBL | A0A4D6NYX1 | 0.0 | A0A4D6NYX1_PAESU; Transcription factor GRAS 2 | ||||
STRING | PGSC0003DMT400033037 | 1e-160 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36710.1 | 1e-139 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0044s0064.1.p |
Publications ? help Back to Top | |||
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