PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0044s0037.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | CO-like | ||||||||
Protein Properties | Length: 397aa MW: 44019.2 Da PI: 4.8731 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.7 | 2.1e-07 | 4 | 34 | 5 | 35 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHk 35 kC+ +++++ +C++++ +lC dC ++ H Kalax.0044s0037.2.p 4 KCDFCGNQRSVVYCRSDDACLCLDCDTSVHT 34 7***************************994 PP | |||||||
2 | zf-B_box | 24 | 7.8e-08 | 47 | 89 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 +C++++++++ l C + ++ lC++C ++H g H++++ Kalax.0044s0037.2.p 47 VCQRCNSQPAVLQCIEERVSLCQSCDWAGH-GastsaaaHKRRN 89 8*****************************.5588888888765 PP | |||||||
3 | CCT | 58.3 | 2.6e-20 | 339 | 382 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a+lRYkeK+k RkFeK++rY sRK++A+ R+RvKGrFvk+ Kalax.0044s0037.2.p 339 RTKAVLRYKEKKKMRKFEKTVRYVSRKERADVRKRVKGRFVKAG 382 889**************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.186 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.8E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.26E-8 | 4 | 35 | No hit | No description |
PROSITE profile | PS50119 | 8.802 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.00E-4 | 47 | 88 | No hit | No description |
SMART | SM00336 | 0.53 | 48 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 3.9E-15 | 339 | 381 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 14.703 | 339 | 381 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MGYKCDFCGN QRSVVYCRSD DACLCLDCDT SVHTANSLSR RHWRTLVCQR CNSQPAVLQC 60 IEERVSLCQS CDWAGHGAST SAAAHKRRNI KFYSDCPSAA ELQAIWSFES EGFLGSVSIG 120 EQEMGLLSIT EKNVKQSEPL STEVNQLCNI NPDEVWNSSA QDMDSLFPDE RLETEVANSP 180 QPKVSFSGAI NPTEDDDLFA NFGMDESELN LENYEELFRV NLSQSEELLE NGGIDSLFEP 240 TNKSLSELDC RETLVSQRVA SAAQPACSKA LSVDSMMTSR TEPVIHCKLR QSSSTLSFSG 300 LAGDGGGDFL DCGTSSMISI GEQPWCQSFQ ESPSPSANRT KAVLRYKEKK KMRKFEKTVR 360 YVSRKERADV RKRVKGRFVK AGETYDYDPL SLTKSC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004303586.1 | 1e-147 | PREDICTED: zinc finger protein CONSTANS-LIKE 9 | ||||
Swissprot | Q9LUA9 | 1e-116 | COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10 | ||||
TrEMBL | A0A2P5B617 | 1e-144 | A0A2P5B617_PARAD; Zinc finger-domain containing protein | ||||
STRING | XP_004303586.1 | 1e-147 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 6e-85 | CONSTANS-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0044s0037.2.p |
Publications ? help Back to Top | |||
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