PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0043s0092.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 436aa MW: 47573.2 Da PI: 7.7171 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.2 | 7.8e-29 | 47 | 103 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+vkg++f rsYYrCt+++C+vkk+ver++ d++++++ g+H+h+ Kalax.0043s0092.2.p 47 SDGYSWRKYGQKHVKGNKFVRSYYRCTHPDCQVKKQVERAH-DGQITDTLVFGDHDHP 103 7****************************************.***************8 PP | |||||||
2 | WRKY | 106.9 | 1e-33 | 221 | 279 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK vkg+++prsYYrC++agCpvkk+ver+++dpkvv++tYeg+H+h+ Kalax.0043s0092.2.p 221 VNDGYRWRKYGQKFVKGNPNPRSYYRCSTAGCPVKKHVERASHDPKVVITTYEGQHDHD 279 58********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 20.197 | 41 | 105 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.0E-24 | 44 | 104 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.27E-22 | 46 | 104 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.7E-30 | 46 | 104 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-22 | 48 | 103 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 8.6E-36 | 208 | 281 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.15E-30 | 213 | 281 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 36.242 | 216 | 281 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.8E-39 | 221 | 280 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.8E-27 | 222 | 278 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 436 aa Download sequence Send to blast |
MVATEESLRG EVHSEIEKMN SPETGILARG FDQEGGTPLV TPEKGPSDGY SWRKYGQKHV 60 KGNKFVRSYY RCTHPDCQVK KQVERAHDGQ ITDTLVFGDH DHPRTQLSLP VTVSCTVVAK 120 EGVMGVPSPV IPEERTPAAP HQTPKPTVHI ATPMPLNVVA SDLSKHAVVQ SIKTKDNVGK 180 DGTPDLKRQK KEPRRPEAVI MDKPTVDPRL VLQTVSEVDM VNDGYRWRKY GQKFVKGNPN 240 PRSYYRCSTA GCPVKKHVER ASHDPKVVIT TYEGQHDHDM PPARMMSNCT SGNSTNQLAL 300 EYNPGVGSDV VDESYQHGKP KDQLNGEQKI ESGEVEKVGN KLVSHSSSGL GSKVSDQISG 360 KSTDNLEAVE SSAVPDNGRE TNKGSKSPGP AAASLMAGED KKPRKERIKE EFSEAIHRNS 420 EHGSPTAGSL DESHV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 9e-36 | 47 | 283 | 2 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015869324.1 | 1e-112 | WRKY transcription factor 1-like | ||||
Refseq | XP_015881045.1 | 1e-112 | WRKY transcription factor 1 | ||||
Swissprot | Q9SI37 | 2e-74 | WRKY1_ARATH; WRKY transcription factor 1 | ||||
TrEMBL | F6HHL8 | 1e-104 | F6HHL8_VITVI; Uncharacterized protein | ||||
STRING | VIT_12s0057g00550.t01 | 1e-105 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G04880.2 | 2e-78 | zinc-dependent activator protein-1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0043s0092.2.p |
Publications ? help Back to Top | |||
---|---|---|---|
|