PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0043s0084.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | TALE | ||||||||
Protein Properties | Length: 663aa MW: 72611 Da PI: 8.8408 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.3 | 1.4e-09 | 372 | 409 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Kalax.0043s0084.2.p 372 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 409 554459******************************88 PP | |||||||
2 | BELL | 113 | 1.6e-36 | 237 | 308 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kk kL+ +l+eV++rY+qy++q+q+v++sF+++ag gsa+ Yt+lAl++iSr+FrcLkdai+ qi Kalax.0043s0084.2.p 237 ERQEIQMKKGKLVCMLDEVEQRYRQYHQQMQIVMASFQQAAGQGSARTYTALALRTISRQFRCLKDAIVTQI 308 79********************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 4.3E-56 | 160 | 306 | IPR006563 | POX domain |
Pfam | PF07526 | 1.2E-46 | 165 | 305 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.195 | 350 | 413 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-29 | 352 | 426 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 5.3E-9 | 353 | 417 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.62E-12 | 353 | 414 | No hit | No description |
SuperFamily | SSF46689 | 5.99E-17 | 354 | 420 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.7E-18 | 370 | 409 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 663 aa Download sequence Send to blast |
MAAYFNGGNS EIQAADGLQT LILMNPSYVN NQQHHQNPNN FIFVNPSMSP ATDQSQQLVG 60 IPLQQNHHQE AISALHGLIP RPHYNLWTPV DPSTATRETP RAQQGLSLSL SNSQQQQQQQ 120 RVDFVGPPSL AISPSGSKDD GMVFGGTPSP ASMISNGPVS GMRSVLLSSK YLKATQQLLE 180 EIVNVGSATD SAKKKDTATS SSSKQAAIEA SSPEVAAAAA GDGENGGKKA AELSTAERQE 240 IQMKKGKLVC MLDEVEQRYR QYHQQMQIVM ASFQQAAGQG SARTYTALAL RTISRQFRCL 300 KDAIVTQIRA VNKSLGEEDT GGKEGGSRLK FVDHHLRQQR ALQQLGMVQH NAWRPQRGLP 360 ERSVSVLRAW LFEHFLHPYP KDSDKHMLAK QTGLTRSQVS NWFINARVRL WKPMVEEMYS 420 EEVKEQENDG SPNKTGNTGA EASASKAPTD ENQLIAFKNA SQGNNGGAYQ NAAAKSDSGS 480 PGRLRNKNTR FSLIGSSELE GITEMSPKQQ RINGQMRHPT GSFESSMEMK SSDARNEHVL 540 MKFGLERQTG DDYSLITAGQ GNFVGGFGSY PVEDMGRFDT SQQYQPRFSG NGRVSLTLGL 600 TDSPQPFIPN QNMRRMDIGD TTEFGTISTT PDRTHTTSTA YESINIQNPK RFAVQLLPDF 660 VA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 5e-16 | 359 | 417 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 5e-16 | 359 | 417 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018809867.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Refseq | XP_018809868.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Refseq | XP_018809869.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Refseq | XP_018809870.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Refseq | XP_018809871.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 1e-156 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | B2MV69 | 0.0 | B2MV69_9MAGN; BEL1 | ||||
STRING | XP_007162972.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 1e-125 | BEL1-like homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0043s0084.2.p |
Publications ? help Back to Top | |||
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