PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0042s0100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 267aa MW: 29003 Da PI: 8.7218 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5.2e-19 | 129 | 178 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + r++lg+f ae+Aa+a+++a+ k++g Kalax.0042s0100.1.p 129 HYRGVRQRP-WGKWAAEIRDP-----HraVRVWLGTFENAEDAARAYDRAAFKFRG 178 7********.**********7.....338*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.0E-32 | 128 | 186 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.31E-21 | 129 | 187 | No hit | No description |
SMART | SM00380 | 7.8E-40 | 129 | 192 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.764 | 129 | 186 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-22 | 129 | 187 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.2E-12 | 129 | 178 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-11 | 130 | 141 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-11 | 152 | 168 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
METPFSRKAG APAAKQSPGF RITSDQEVAA MVAALTNVVT GGGGQPQPVQ SLSHTTTTSS 60 YSRESESGGS VWSISSGNDT CQFCRLRDCL GCNLFAPSLE AAEPVKSSKS RGKAAARKMK 120 KQSSQSFRHY RGVRQRPWGK WAAEIRDPHR AVRVWLGTFE NAEDAARAYD RAAFKFRGPR 180 AKLNFPYEDY SSALEQTSSD SAPQQQQCRS SSGQTSDPTV YPSMDFGAPE MWDFRGSDEE 240 MRHWMMSMEI ASGESSGSAS GNVHSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-25 | 128 | 186 | 4 | 63 | ATERF1 |
3gcc_A | 2e-25 | 128 | 186 | 4 | 63 | ATERF1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 3e-30 | redox responsive transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0042s0100.1.p |