PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0042s0077.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 549aa MW: 60811.8 Da PI: 7.1484 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 27.5 | 7.6e-09 | 284 | 335 | 6 | 55 |
AP2 6 VrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 V +++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g Kalax.0042s0077.1.p 284 VDRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDMEEKAARAYDLAALKYWG 335 889*************87776664446655.77******************98 PP | |||||||
2 | AP2 | 33.9 | 7.8e-11 | 378 | 438 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng......krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + n+ + + l+ gt eeAa+a++ a+ k++g Kalax.0042s0077.1.p 378 SIYRGVTRHHQHGRWQARIGRVAGNKdlylgtFKVFILLNLLGTQEEAAEAYDIAAIKFRG 438 57*****************99777778886544499999999****************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.76E-16 | 277 | 344 | No hit | No description |
PROSITE profile | PS51032 | 15.883 | 278 | 343 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-15 | 278 | 349 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.6E-10 | 279 | 344 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-11 | 284 | 345 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.2E-6 | 284 | 335 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-4 | 378 | 438 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.67E-23 | 378 | 448 | No hit | No description |
SuperFamily | SSF54171 | 4.51E-13 | 378 | 447 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 15.382 | 379 | 446 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.7E-13 | 379 | 446 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-27 | 379 | 452 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 549 aa Download sequence Send to blast |
MKCSMSNENA AAAATTNINH TSWLGFSLAP RMTMELPLDS HHQPVPYSSA APTLPSTYFH 60 TLPNLDASRN CYGLEIGDYS SSGFPAMPLN SDGSLCIMGA SMCTVSLSHA PKLEDFFGGG 120 TMGSRECEAK DRQAAMALSL DSTCYQQQTT DQETSTSLHF LHNLQDGMRP QQIEIQQHPL 180 YCLPSSLGDD DHYELKNCSN DDALGERVNH VGFGDLQALT LSMSPGSQSG NAFASQRVPH 240 PAVEPLWLDS KKRGVEKVNQ KPIVHRKSID TFGQRTSQYR DITVDRHRWT GRYEAHLWDN 300 SCKKEGQSRK GRQGGYDMEE KAARAYDLAA LKYWGSSTHI NFPAENYQQE LEAMKNMSRQ 360 EYVANLRRKS SGFSRGASIY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF KVFILLNLLG 420 TQEEAAEAYD IAAIKFRGVS AVTNFDIARY NVERIIESST LPSGDLARRS KEPEPITALA 480 ADQHLTNTES PNIASPGSQH DSMSFHQMPP QLTAHHKPQL QHYSAVISES DKVANYVSNA 540 SSQVTSFK* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021682654.1 | 1e-172 | AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 1e-135 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A1U8B2W5 | 1e-169 | A0A1U8B2W5_NELNU; AP2-like ethylene-responsive transcription factor ANT | ||||
STRING | XP_010273592.1 | 1e-170 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-130 | AP2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0042s0077.1.p |