PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0042s0039.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 232aa    MW: 26053.9 Da    PI: 6.6178
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0042s0039.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.81.6e-26127185159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYG+K+ k++++ r+YY+Cts gC+vkk ver  ed ++v++ Y g H+he
  Kalax.0042s0039.1.p 127 LDDGYRWRKYGKKPLKNNPNLRNYYKCTSGGCQVKKIVERWIEDSSYVITQYDGVHTHE 185
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-28114186IPR003657WRKY domain
SuperFamilySSF1182907.85E-25120185IPR003657WRKY domain
PROSITE profilePS5081126.968122187IPR003657WRKY domain
SMARTSM007748.4E-30127186IPR003657WRKY domain
PfamPF031065.8E-20128185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MDLYSLENPN PSLDLYIDVD DYSLSQFDCF FLNELSNYEA GYGFIGGAEK DQSSYTSSPA  60
VTSPPEKVSR SEQDPLLLVQ MLVSGGASSS INAAVNVMRN EGKRKMQGDG PKPQRVAFKT  120
KSKLDVLDDG YRWRKYGKKP LKNNPNLRNY YKCTSGGCQV KKIVERWIED SSYVITQYDG  180
VHTHESSCSY YYDNNNNHHH LQGITATDYY HCQNDANTCI PSAAETKVHL K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-21117185775Probable WRKY transcription factor 4
2lex_A8e-21117185775Probable WRKY transcription factor 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.16e-26WRKY DNA-binding protein 51