PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0041s0116.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 354aa MW: 40378.9 Da PI: 5.6477

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0041s0116.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180	6.1e-56	7	134	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeelv +yL +k++g+++el ++i+e+d+yk+ePwdLp k + +++ ewyfFs rd+ky++g+r+nrat++gyWkatgk Kalax.0041s0116.1.p 7 LPPGFRFHPTDEELVAYYLDRKITGQSIEL-DIIPEIDLYKCEPWDLPdKsYLPSKDMEWYFFSLRDRKYPNGSRTNRATSAGYWKATGK 95 79**************************.99**********95335666888**************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d++v s +++ g+kktLv+y+grap+g +t+Wvmheyrl Kalax.0041s0116.1.p 96 DRAVRS-QKKSLGMKKTLVYYRGRAPHGIRTNWVMHEYRL 134 **.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-63	3	163	IPR003441	NAC domain
PROSITE profile	PS51005	60.521	7	163	IPR003441	NAC domain
Pfam	PF02365	7.0E-29	8	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MSPMTTLPPG FRFHPTDEEL VAYYLDRKIT GQSIELDIIP EIDLYKCEPW DLPDKSYLPS 60 KDMEWYFFSL RDRKYPNGSR TNRATSAGYW KATGKDRAVR SQKKSLGMKK TLVYYRGRAP 120 HGIRTNWVMH EYRLIHTSSS PSSSSCSLNA LKDSYALCRV FKKTSLIVPQ SKFEKREDTQ 180 NGPNRRRNKI QLQYEESNAI NEDGVAVEDY EESFHPYDNC NNNPSAASSI SDATQERSLV 240 DEKEDMEQAN ACPFFAASIS DEANSSTPSY LYSPKLDSSD LLFQDLQSFH NNILAPFDPY 300 AYSPALSLED FTPLNENNRY READHSASTI ATFEEIISLC SSQHRSIPLH IPY*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MSPMTTLPPG FRFHPTDEEL VAYYLDRKIT GQSIELDIIP EIDLYKCEPW DLPDKSYLPS  60
KDMEWYFFSL RDRKYPNGSR TNRATSAGYW KATGKDRAVR SQKKSLGMKK TLVYYRGRAP  120
HGIRTNWVMH EYRLIHTSSS PSSSSCSLNA LKDSYALCRV FKKTSLIVPQ SKFEKREDTQ  180
NGPNRRRNKI QLQYEESNAI NEDGVAVEDY EESFHPYDNC NNNPSAASSI SDATQERSLV  240
DEKEDMEQAN ACPFFAASIS DEANSSTPSY LYSPKLDSSD LLFQDLQSFH NNILAPFDPY  300
AYSPALSLED FTPLNENNRY READHSASTI ATFEEIISLC SSQHRSIPLH IPY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-57	3	165	14	170	NAC domain-containing protein 19
3swm_B	2e-57	3	165	14	170	NAC domain-containing protein 19
3swm_C	2e-57	3	165	14	170	NAC domain-containing protein 19
3swm_D	2e-57	3	165	14	170	NAC domain-containing protein 19
3swp_A	2e-57	3	165	14	170	NAC domain-containing protein 19
3swp_B	2e-57	3	165	14	170	NAC domain-containing protein 19
3swp_C	2e-57	3	165	14	170	NAC domain-containing protein 19
3swp_D	2e-57	3	165	14	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008225989.1	1e-107	PREDICTED: NAC domain-containing protein 86
Refseq	XP_021598037.1	1e-107	NAC domain-containing protein 96
Swissprot	Q9FFI5	1e-82	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A0M4G3Q6	1e-106	A0A0M4G3Q6_MANES; NAC transcription factors 56
STRING	XP_008225989.1	1e-107	(Prunus mume)
STRING	cassava4.1_024467m	1e-107	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54330.1	7e-87	NAC domain containing protein 20

Link Out ? help Back to Top
Phytozome	Kalax.0041s0116.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]