PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0041s0113.3.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 26592.3 Da    PI: 9.3918
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0041s0113.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.52e-29959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krien + rqvtf+kRrng++KKA+ELSvLCdaeva+++fs++g+lyeys+
  Kalax.0041s0113.3.p  9 KRIENVTSRQVTFCKRRNGLMKKAYELSVLCDAEVALMVFSTRGRLYEYSN 59
                         79***********************************************95 PP
2K-box106.63e-35791745100
                K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                          +  +++ ++ + +qqe+akL+++i+++q+++R+l+Ge+L+sL++keL+qLe++Le+++++iRskK+e+ll++ie lqk+e el++e+ +L
  Kalax.0041s0113.3.p  79 TAANTTVTNVQFYQQESAKLRQQIHMIQNTNRNLMGESLGSLNVKELKQLENRLERGVTRIRSKKHEMLLAEIEFLQKREIELENETICL 168
                          455578899********************************************************************************* PP

                K-box  95 rkklee 100
                          r+k++e
  Kalax.0041s0113.3.p 169 RAKVAE 174
                          ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.2E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.039161IPR002100Transcription factor, MADS-box
CDDcd002651.53E-41277No hitNo description
SuperFamilySSF554551.06E-31283IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-313859IPR002100Transcription factor, MADS-box
PfamPF014864.4E-2686172IPR002487Transcription factor, K-box
PROSITE profilePS5129715.01588178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MGRGKIEIKR IENVTSRQVT FCKRRNGLMK KAYELSVLCD AEVALMVFST RGRLYEYSNN  60
NSIKSTIERY KKACSDSTTA ANTTVTNVQF YQQESAKLRQ QIHMIQNTNR NLMGESLGSL  120
NVKELKQLEN RLERGVTRIR SKKHEMLLAE IEFLQKREIE LENETICLRA KVAEVERLQQ  180
ANMEAANQEF NTIQAYVARN FFQHDLLQGA DNASQVNHFA LPDDKILRLE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-18161161Myocyte-specific enhancer factor 2B
1tqe_Q1e-18161161Myocyte-specific enhancer factor 2B
1tqe_R1e-18161161Myocyte-specific enhancer factor 2B
1tqe_S1e-18161161Myocyte-specific enhancer factor 2B
6c9l_A1e-18161161Myocyte-specific enhancer factor 2B
6c9l_B1e-18161161Myocyte-specific enhancer factor 2B
6c9l_C1e-18161161Myocyte-specific enhancer factor 2B
6c9l_D1e-18161161Myocyte-specific enhancer factor 2B
6c9l_E1e-18161161Myocyte-specific enhancer factor 2B
6c9l_F1e-18161161Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in seed development (PubMed:21447172, Ref.1, PubMed:29853599). Plays a role in seed morphogenesis by promoting the correct development of endotesta cell layer, which directs the further development of the seed coat, the endosperm, and consequently the embryo (Ref.1, PubMed:29853599). {ECO:0000269|PubMed:21447172, ECO:0000269|PubMed:29853599, ECO:0000269|Ref.1}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021614255.11e-120agamous-like MADS-box protein AGL11 isoform X1
SwissprotF6I4571e-120AG11C_VITVI; Agamous-like MADS-box protein AGL11
TrEMBLA0A2H4L6S51e-120A0A2H4L6S5_CERJA; AGL11
STRINGXP_006478206.11e-119(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.11e-106MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Mejía N, et al.
    Molecular, genetic and transcriptional evidence for a role of VvAGL11 in stenospermocarpic seedlessness in grapevine.
    BMC Plant Biol., 2011. 11: p. 57
    [PMID:21447172]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]
  5. Malabarba J, et al.
    The MADS-box gene Agamous-like 11 is essential for seed morphogenesis in grapevine.
    J. Exp. Bot., 2017. 68(7): p. 1493-1506
    [PMID:28369525]
  6. Royo C, et al.
    The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11.
    Plant Physiol., 2018. 177(3): p. 1234-1253
    [PMID:29853599]