PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0041s0085.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NF-YC | ||||||||
Protein Properties | Length: 255aa MW: 28680.6 Da PI: 5.8175 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 174.4 | 1.1e-54 | 70 | 173 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 ql+sfw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fi+eltlrsw+h+eenkrrtl+k+diaaa+ rtd Kalax.0041s0085.1.p 70 QLQSFWANQhqeIERVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFIFELTLRSWNHTEENKRRTLQKNDIAAAIGRTD 159 89*****999999***************************************************************************** PP NF-YC 88 ifdflvdivprdel 101 ifdflvdivpr++l Kalax.0041s0085.1.p 160 IFDFLVDIVPREDL 173 ***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.150.60 | 9.3E-4 | 54 | 94 | IPR001606 | ARID DNA-binding domain |
SuperFamily | SSF47113 | 1.31E-32 | 63 | 164 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.8E-21 | 92 | 155 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 9.6E-37 | 95 | 155 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MDHQGQGQQP AMGTVDNSAQ MSYAMPPYQP NQMTGAAPGA ASAQAGGQLP QHQLAYQHIN 60 PLQQQQLQQQ LQSFWANQHQ EIERVTDFKN HSLPLARIKK IMKADEDVRM ISAEAPVIFA 120 RACEMFIFEL TLRSWNHTEE NKRRTLQKND IAAAIGRTDI FDFLVDIVPR EDLKDEMLGS 180 IPRGSIPVGA PADMLPYPYM PMQHMPQVGT PGMIMGKPMM DPSMYAQQPH PYMAPQMWPQ 240 PQQQQQQEQS SSDQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 7e-60 | 77 | 170 | 2 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 142 | 148 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004494629.1 | 1e-133 | nuclear transcription factor Y subunit C-3-like | ||||
Swissprot | Q8L4B2 | 3e-85 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | A0A1S2XUA5 | 1e-132 | A0A1S2XUA5_CICAR; nuclear transcription factor Y subunit C-3-like | ||||
STRING | XP_004494629.1 | 1e-133 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 2e-79 | nuclear factor Y, subunit C9 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0041s0085.1.p |