PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0041s0017.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 301aa    MW: 33331.1 Da    PI: 9.9828
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0041s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171964147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         rg W ++Ede+l ++v  +G ++W+tIa+ +  gRt+k+c++rw++ 
  Kalax.0041s0017.1.p 19 RGHWRPDEDEKLRQLVLTYGARNWNTIAESIE-GRTGKSCRLRWFNQ 64
                         899*****************************.***********996 PP
2Myb_DNA-binding55.11.8e-1771114146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          + ++++eE+++l++a++ +G++ W+tIa+ ++ gRt++ +k++++ 
  Kalax.0041s0017.1.p  71 KEPFSKEEEDRLIEAHNIHGNK-WSTIASLFP-GRTDNALKNHFHV 114
                          579*******************.*********.**********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.9171469IPR017930Myb domain
SuperFamilySSF466892.62E-2917112IPR009057Homeodomain-like
SMARTSM007171.9E-131867IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-252072IPR009057Homeodomain-like
PfamPF139219.2E-172282No hitNo description
CDDcd001671.30E-132263No hitNo description
PROSITE profilePS5129418.10870120IPR017930Myb domain
SMARTSM007171.8E-1470118IPR001005SANT/Myb domain
CDDcd001671.61E-1173113No hitNo description
Gene3DG3DSA:1.10.10.604.3E-2073118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGDSNYSSGN SETASKVLRG HWRPDEDEKL RQLVLTYGAR NWNTIAESIE GRTGKSCRLR  60
WFNQLNPLIK KEPFSKEEED RLIEAHNIHG NKWSTIASLF PGRTDNALKN HFHVVTARRR  120
REEMRSPGPL GAFFQKPSDT RSHNPLRNSS HFRGFGTPYP FQYPPTLSNT LLNDTPWRVG  180
SSSSAVQTSG TSNSFGFTRM MIEATAQANN DNYVFLPKHS KDGIGSWMAS GSSSLVPAPD  240
NYQPIRLLGL GTEQATPPVE KNHNLFTVSG SGTGKVGQGS WSALKDTPPF IDFLGVGDKY  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30171195107B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.12e-51myb domain protein 69