PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0040s0064.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GATA | ||||||||
Protein Properties | Length: 173aa MW: 19224.2 Da PI: 9.8349 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 24.3 | 4.2e-08 | 40 | 59 | 1 | 20 |
GATA 1 CsnCgttkTplWRrgpdgnk 20 C C+tt TplWR gp g++ Kalax.0040s0064.1.p 40 CMECNTTRTPLWRGGPAGPR 59 999***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 8.853 | 34 | 57 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 7.0E-6 | 38 | 57 | IPR013088 | Zinc finger, NHR/GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MCKGSGKLRY VSDSEFPTRN TNSMMMMESS SSSSQFRRTC MECNTTRTPL WRGGPAGPRV 60 SKMSLNLFPL KCFHLYHSAF TSYVFAGSHC VMHVGSDTER ERGIILNKLK RKSSNDGTGR 120 KGSLSMRLMG LVDGEIRKLR EEEEAAILLM ALSCGYGMDL PRVREIHSQS AP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16870.1 | 3e-08 | GATA transcription factor 17 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0040s0064.1.p |