PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0040s0021.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 218aa MW: 23753.2 Da PI: 8.4079 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 95.2 | 7.3e-30 | 4 | 104 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C+++C++ p++ p++q++++ +++k++G++ +l+l++a+p++ r+++++sl+yeA r+ +P+yG vg+++++++ Kalax.0040s0021.1.p 4 SCNGCRVLRKGCTDSCTIKPCLqwiktPEAQANATLFLAKFYGRAGLLNLIDAAPPHLRPAVFRSLLYEASGRILNPIYGPVGLLWSGSW 93 6***************************************************************************************** PP DUF260 86 qleqlkaelal 96 ql+q++++ +l Kalax.0040s0021.1.p 94 QLCQAAVDCVL 104 *****998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.766 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-24 | 4 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCTDSCT IKPCLQWIKT PEAQANATLF LAKFYGRAGL LNLIDAAPPH 60 LRPAVFRSLL YEASGRILNP IYGPVGLLWS GSWQLCQAAV DCVLNGLPIT PINSEAAETP 120 QGPPLKTCDI RHVSRDLHKV KSRGRFKRTD SKQAVVNKID RKPEPENNRS ASHDSTVSHP 180 APPVWHFEEP SRDSESVLSG ETDAAVAGFD LELSLGI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027077434.1 | 6e-93 | LOB domain-containing protein 41-like | ||||
Refseq | XP_027077531.1 | 6e-93 | LOB domain-containing protein 41-like | ||||
Refseq | XP_027179837.1 | 6e-93 | LOB domain-containing protein 41 | ||||
Swissprot | Q9M886 | 3e-78 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A218VVC6 | 3e-92 | A0A218VVC6_PUNGR; Uncharacterized protein | ||||
TrEMBL | A0A2I0L4R4 | 3e-92 | A0A2I0L4R4_PUNGR; Uncharacterized protein | ||||
STRING | VIT_14s0006g02950.t01 | 7e-91 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-80 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0040s0021.1.p |