PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0039s0119.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 315aa    MW: 34593.6 Da    PI: 4.5975
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0039s0119.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.94e-16119166152
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkk 52 
                          s ykGVr++k +g+W+AeIrd +     +  r++lg++ tae+A ka+ +  ++
  Kalax.0039s0119.1.p 119 SLYKGVRQRK-WGKWAAEIRDpF-----KgIRVWLGTYSTAEDASKAYQRKELE 166
                          57*******9.**********55.....45******************876665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.05E-22119167No hitNo description
SuperFamilySSF541712.35E-16119168IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-21120172IPR001471AP2/ERF domain
SMARTSM003807.8E-18120187IPR001471AP2/ERF domain
PfamPF008476.4E-9120162IPR001471AP2/ERF domain
PROSITE profilePS5103219.691120181IPR001471AP2/ERF domain
PRINTSPR003672.2E-9121132IPR001471AP2/ERF domain
PRINTSPR003672.2E-9143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MIKPLLVNPN LTVKSASDSA ASSPVGAAAR FSTKSVRKVR IICSDPYATE SSEDEDEYVV  60
KRSKRIVQEI QLPKLGNLKK ERNEELTPTS SGPYGDESKS CGKRRRMASK PAVRRPSGSL  120
YKGVRQRKWG KWAAEIRDPF KGIRVWLGTY STAEDASKAY QRKELEFKAM AAAIKSHSNL  180
STNEKTDVIA FSNETESGAS NTSSTSTLSE VAGTEKLSGP MEPAIVDGVG EDDTIDPLKT  240
SLLDQEISLG LEFDSMFMDA DFRPMFDEFG SVEDFDFLFD GVEDHSDTDL PDFDINLGST  300
ELAWIEESLN ITCP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-14121174357ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-14118174360ATERF1
3gcc_A2e-14118174360ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.26e-37ERF family protein