PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0039s0037.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 163aa MW: 18110.7 Da PI: 10.3895 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 53.8 | 2.6e-17 | 41 | 74 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C C+tt TplWR gp g+++LCnaCG+++rk++ Kalax.0039s0037.1.p 41 CMECNTTRTPLWRGGPAGPRSLCNACGIRHRKRK 74 999*****************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.347 | 35 | 71 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 5.7E-13 | 35 | 75 | No hit | No description |
SMART | SM00401 | 1.8E-13 | 35 | 87 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 7.8E-15 | 39 | 75 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.62E-11 | 40 | 75 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 41 | 66 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.6E-15 | 41 | 74 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 163 aa Download sequence Send to blast |
MCEGSGKLRD VSDSEFPTRN TNSMIMMESS SSSSSQFRRT CMECNTTRTP LWRGGPAGPR 60 SLCNACGIRH RKRKRDHSSL ITTSDDRSKY KKLKYKDKLK RKSSNDGTGR KGSLSMRLMG 120 LVDGEIRKLR EEEEAAILLM ALSCGETDLH GPCPPRVRGH GQ* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 72 | 93 | RKRDHSSLITTSDDRSKYKKLK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002320320.2 | 3e-28 | GATA transcription factor 16 | ||||
TrEMBL | B9I9M5 | 7e-27 | B9I9M5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s11940.1 | 1e-27 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G49300.1 | 3e-18 | GATA transcription factor 16 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0039s0037.1.p |