PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0038s0170.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 281aa    MW: 31266.1 Da    PI: 6.7868
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0038s0170.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.4e-151461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W++eEd  l +++ + G g W++++ + g++R++k+c++rw++yl
  Kalax.0038s0170.1.p 14 KGAWSEEEDAMLRECIDKNGEGKWHLVPLKSGLNRCRKSCRLRWLNYL 61
                         79********************************************97 PP
2Myb_DNA-binding50.54.7e-1667112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg ++++E +ll++++k+lG++ W++Ia +++ gRt++++k++w+++l
  Kalax.0038s0170.1.p  67 RGGFSEDEVDLLLRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 112
                          7889******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.667961IPR017930Myb domain
SuperFamilySSF466892.13E-2711108IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-191164IPR009057Homeodomain-like
SMARTSM007174.3E-131363IPR001005SANT/Myb domain
PfamPF002497.6E-141461IPR001005SANT/Myb domain
CDDcd001671.03E-81661No hitNo description
PROSITE profilePS5129425.00262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2365115IPR009057Homeodomain-like
SMARTSM007176.7E-1666114IPR001005SANT/Myb domain
PfamPF002497.6E-1567112IPR001005SANT/Myb domain
CDDcd001673.86E-687112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MLAAEHDGPR GVRKGAWSEE EDAMLRECID KNGEGKWHLV PLKSGLNRCR KSCRLRWLNY  60
LKPNIRRGGF SEDEVDLLLR LHKLLGNRWS LIAGRLPGRT ANDVKNYWNT HLRKKTMLRL  120
QAAAAAAADC HRATTKVIRP RPRTFSKTLL VQCMRSSQQQ QQAAPAAGLL HTTTTTTAVS  180
KLEGHHDNNA NPDAVGEQIQ WWKSLLDDQL SSDGQEVAAA ALASESRSDD HVSYEIWAAE  240
DQSGERPEET GLMTGEIAFD IELWDFLADD EAQATSSVLC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-22141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007033038.15e-72PREDICTED: transcription factor MYB75 isoform X1
SwissprotQ9FNV95e-65MY113_ARATH; Transcription factor MYB113
STRINGEOY039642e-71(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.18e-58myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]