PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0038s0129.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HB-PHD
Protein Properties Length: 1037aa    MW: 112009 Da    PI: 5.8531
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0038s0129.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox37.34.7e-12654704252
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                          ++R  + +  ++ L e+F+kn+yp ++ +e LA++lg++  +V  WF N R
  Kalax.0038s0129.1.p 654 SSRNMLGEAATQKLAEAFQKNQYPERAVKENLANELGIPYPKVDKWFGNAR 704
                          6788888999***************************************99 PP
2PHD41.82.4e-14281336151
                          SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                  PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                          +C +Cg+    +++++vlCd +C+++fH+ Cl+++l +e++p +   wlC+ C++k
  Kalax.0038s0129.1.p 281 YCTICGSkdLSADNDIVLCDgECNRAFHQLCLKPPLLTEDIPPDdqGWLCPGCDCK 336
                          7******77677********56*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.35E-13271339IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.7E-13278335IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.19279336IPR019787Zinc finger, PHD-finger
SMARTSM002497.0E-11281334IPR001965Zinc finger, PHD-type
PfamPF006281.8E-11281336IPR019787Zinc finger, PHD-finger
CDDcd155042.68E-26281333No hitNo description
PROSITE patternPS013590282333IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.604.1E-11639704IPR009057Homeodomain-like
SuperFamilySSF466891.75E-10650707IPR009057Homeodomain-like
PROSITE profilePS5007112.309650710IPR001356Homeobox domain
SMARTSM003891.3E-8652714IPR001356Homeobox domain
CDDcd000867.76E-9653704No hitNo description
PfamPF000461.3E-9654704IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1037 aa     Download sequence    Send to blast
MGKSEDTSQA KPDEPMQENG FLNDEVEGTS SKVAPNLVGR SDTSDADATG QPTEDHNKSS  60
KSNGEGLSSL SPDEIKQIVA NFLGTVSADN SIKGLDGEVP ADHSINDYGF SKYKSRFSSG  120
KKKKTSAKLS RKKITGSDSQ RNRTLRSRGR SEVYVQNIDA ENAHSTPLAS CSTERRRKKK  180
KILRENSDDV FTKIRKQVRY ILNKVRYEQN LIDAYDGEGW KGLSLDKLKP ERELQRASSE  240
ILRCKLRLRD LFQRLDALCD EGSYPRSMFD SEGLLDTEDI YCTICGSKDL SADNDIVLCD  300
GECNRAFHQL CLKPPLLTED IPPDDQGWLC PGCDCKFDCT ELLNDSLGTD LSMKLNWTCV  360
FPEAAAAAAA AGANLQDEIL GLPSDDSGDN DFDPDHTDVD EKVEEYKSEE GGESSGGEGS  420
TSDESDFTSA SEDLGDFVNE GQLNGNPPDN SDEEDDGDYD PDAPDPDEQI KEESSSSDFT  480
SDSEDFVPEV DNVTSKTNGS SELAMLETEQ ESPAPGSKKR DIERLDYKKL YDETYGNASS  540
DSSDDEEWTE VGPSRKRKTK DQRVDSTLPS KNVEAAADTS DDEEEWADVG SSRKRKNKNR  600
RVDSALSSKN IEASLDDKQS ADEERKLQEA EHSTQKRSRK KLKSSAENGS ASKSSRNMLG  660
EAATQKLAEA FQKNQYPERA VKENLANELG IPYPKVDKWF GNARWSFNHP LHTRTVSKSD  720
IAKKSPSQAT PGSKADITNN SRNSHPSQNL SDANATANDS PVKPSSPLKP SSTRALANKS  780
PSQVISGRKA VINNNSSNSH PSQNLSNGKT TGNVSPVNTS APLKPSSTQA VGKRGQSQNL  840
PSPKSHAAGT TSQVDASKSP PPQSSKRLSG RHQETVTSYF SKAEANKPST INTEGSADAV  900
GSSKLKATNP TPNSKQRGKK AVPSSEKEPK APCAPAPNKA TTPAANLKQR GEKSVSSSEK  960
VPAAPSAPAP IVLAQKSPSL AAASRQNKSP TPKSRKTATK LLPSNQKSAI ASSMPAASTK  1020
AGGATEKRKV QTRSKK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174180RRRKKKK
2175180RRKKKK
3553558SRKRKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6RGY41e-152A0A2R6RGY4_ACTCH; Pathogenesis-related homeodomain protein
STRINGAquca_083_00002.11e-135(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.12e-81Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain