PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0035s0135.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 313aa MW: 34706.5 Da PI: 7.5698

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0035s0135.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.8	6.9e-12	140	187	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h ++Er+RR+++ + f L l+P + kK++Ka++L ++v+++k+Lq Kalax.0035s0135.1.p 140 QNHIMAERKRRENLTQLFIALSALVPGL-----KKMDKASVLAETVKHLKQLQ 187 68************************.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.11	137	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.9E-15	140	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.6E-10	140	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.60E-12	140	191	No hit	No description
SuperFamily	SSF47459	6.94E-16	140	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-12	143	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MEDPSLINQW MMMSSYEDLS AVLPPAMSSA AAASSDDDHL QHSLLYRRQL TAVDDFDHFN 60 NRPAKQLKAS SWGSSCESMP SPETQNKFSE DYFSTVNPPQ FKINRLDYPV WDNENTYVSK 120 PSHLRASGTN SAATRSSGAQ NHIMAERKRR ENLTQLFIAL SALVPGLKKM DKASVLAETV 180 KHLKQLQDRI KTLEDQIKSN KATDSRIRNP SVFSGEMFVK GAPDWQLPEI DARVCGRSVL 240 IRIIHCDKNK EGVIEKTLSE VAKLGLAVVS SNVLAFGGSA LHITIVAKMD AECCKTAEEL 300 VRTLRAAFMD FV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	145	150	ERKRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	2e-41	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0035s0135.1.p