PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0035s0094.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

TALE

Protein Properties

Length: 678aa MW: 74135.1 Da PI: 6.7067

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0035s0094.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.6	2.4e-09	472	509	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Kalax.0035s0094.1.p 472 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 509 554459******************************88 PP
2	BELL	122.3	2e-39	332	403	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 er e+q+kk+kLl +l+eVd+rY++y+eq+q+v++sF+ v+g+gsa pYt+lA+ka+SrhFrcLkda+a q+ Kalax.0035s0094.1.p 332 ERVEHQRKKVKLLAMLDEVDRRYNHYCEQMQMVVNSFDLVMGYGSAVPYTALAQKAMSRHFRCLKDAVAAQL 403 688******************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	7.5E-71	251	401	IPR006563	POX domain
Pfam	PF07526	1.7E-49	257	400	IPR006563	POX domain
PROSITE profile	PS50071	12.325	450	513	IPR001356	Homeobox domain
CDD	cd00086	4.73E-12	453	514	No hit	No description
SMART	SM00389	8.1E-9	453	517	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.55E-17	455	520	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.4E-28	456	519	IPR009057	Homeodomain-like
Pfam	PF05920	3.3E-18	470	509	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 678 aa Download sequence Send to blast
MSQDYHQQEN IYSFSNGFGR SEQQQILREK LAGGGGFSAP DENSGAGIST IYETAGMLSE 60 MFSYPAGVSS ATQLLHQMGP PGFNDSRQPQ PPPGIQEWYA DRKDPNILEF RDVSTAESIQ 120 QQQRQQQPQM SAMNAADSAA AAMQLFLMNP QSRPSTSPGA ASAPPQSNTL HMLLPNHPNS 180 GGFGTWGGGG GVAGEVQGLS LSLASSLEAA KADQFFFNQH HQQQQHTLHF NHQMNNNNGL 240 FVGPSSSSSP LAAMNLLRSS KYSKPTQELL EEFCSVGRGH FKKTKLRNNN NLNPNNPDQT 300 AAAAIDGNGG GGASSSSTKE GSTAPPALTA AERVEHQRKK VKLLAMLDEV DRRYNHYCEQ 360 MQMVVNSFDL VMGYGSAVPY TALAQKAMSR HFRCLKDAVA AQLKHSCELL GEKDAAAGGG 420 VTKGETPRLR ILDQSLRQQR AFHQMGMMEN EAWRPQRGLP ERSANILRAW LFEHFLHPYP 480 SDADKHLLAR QTGLSRNQVS NWFINARVRL WKPMVEEMYQ QEAKEEEASE IPENNYENSN 540 ENTNNQEDLQ NDPPITHHYN STSELNHHTG VSSRFSGMPQ QAPNMVMSAA GPPPQGYYHQ 600 RFHVEMMGGD DPHLRNYSGG SSSTPSGGYI GGEPAGLIRF GTTTTTVGDV SLTLGLRQHS 660 GNLPEKNSFS VRDFGGC*

Sequence ? help Back to Top

Protein Sequence Length: 678 aa Download sequence Send to blast

MSQDYHQQEN IYSFSNGFGR SEQQQILREK LAGGGGFSAP DENSGAGIST IYETAGMLSE  60
MFSYPAGVSS ATQLLHQMGP PGFNDSRQPQ PPPGIQEWYA DRKDPNILEF RDVSTAESIQ  120
QQQRQQQPQM SAMNAADSAA AAMQLFLMNP QSRPSTSPGA ASAPPQSNTL HMLLPNHPNS  180
GGFGTWGGGG GVAGEVQGLS LSLASSLEAA KADQFFFNQH HQQQQHTLHF NHQMNNNNGL  240
FVGPSSSSSP LAAMNLLRSS KYSKPTQELL EEFCSVGRGH FKKTKLRNNN NLNPNNPDQT  300
AAAAIDGNGG GGASSSSTKE GSTAPPALTA AERVEHQRKK VKLLAMLDEV DRRYNHYCEQ  360
MQMVVNSFDL VMGYGSAVPY TALAQKAMSR HFRCLKDAVA AQLKHSCELL GEKDAAAGGG  420
VTKGETPRLR ILDQSLRQQR AFHQMGMMEN EAWRPQRGLP ERSANILRAW LFEHFLHPYP  480
SDADKHLLAR QTGLSRNQVS NWFINARVRL WKPMVEEMYQ QEAKEEEASE IPENNYENSN  540
ENTNNQEDLQ NDPPITHHYN STSELNHHTG VSSRFSGMPQ QAPNMVMSAA GPPPQGYYHQ  600
RFHVEMMGGD DPHLRNYSGG SSSTPSGGYI GGEPAGLIRF GTTTTTVGDV SLTLGLRQHS  660
GNLPEKNSFS VRDFGGC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-16	459	517	5	63	Homeobox protein Meis2
3k2a_B	2e-16	459	517	5	63	Homeobox protein Meis2
4xrm_A	2e-16	459	517	5	63	Homeobox protein Meis2
4xrm_B	2e-16	459	517	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012079108.1	0.0	BEL1-like homeodomain protein 2
Refseq	XP_012079109.1	0.0	BEL1-like homeodomain protein 2
Swissprot	Q9SW80	1e-145	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A067KJ17	0.0	A0A067KJ17_JATCU; Uncharacterized protein
STRING	Gorai.007G207200.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23760.3	1e-131	BEL1-like homeodomain 4

Link Out ? help Back to Top
Phytozome	Kalax.0035s0094.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]