PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0035s0044.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 203aa    MW: 22325.8 Da    PI: 8.4804
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0035s0044.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19110159255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr+++ +g+W+AeIrdp+    r +r++lg+f tae Aa+a+++a+ +++g
  Kalax.0035s0044.1.p 110 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFETAEAAARAYDRAAIEFRG 159
                          59*******.**********82....48************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.67E-21109167No hitNo description
SuperFamilySSF541711.18E-22110168IPR016177DNA-binding domain
PROSITE profilePS5103225.501110167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-32110168IPR001471AP2/ERF domain
PfamPF008477.8E-14110159IPR001471AP2/ERF domain
SMARTSM003803.1E-39110173IPR001471AP2/ERF domain
PRINTSPR003674.7E-12111122IPR001471AP2/ERF domain
PRINTSPR003674.7E-12133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MESFITNTSS SISKEEEFSA MVSALKHVIS GDTPPNPQPS SSFTSSEDSH IISLPDIGAC  60
GRCNFDGCLG CDYFPAEKQS HSAVISGGAS EKKRSNEDVG RKRKHRVKKN YRGVRQRPWG  120
KWAAEIRDPR RAARVWLGTF ETAEAAARAY DRAAIEFRGN RAKLNFPMTD YNSASTVAGC  180
DGNLIKTEEA SSNKKVEEEN ADK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-25109168464ATERF1
3gcc_A3e-25109168464ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010026297.15e-59PREDICTED: ethylene-responsive transcription factor ERF109
SwissprotQ9SZ064e-37EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A059AYI41e-57A0A059AYI4_EUCGR; Uncharacterized protein
STRINGXP_010026297.12e-58(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.12e-37redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]