PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0034s0090.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 439aa    MW: 46970.1 Da    PI: 5.8784
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0034s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.7e-1873118147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +g+W++eEd +l+ +v+++G ++W++Iar ++ gR++k+c++rw + 
  Kalax.0034s0090.1.p  73 KGPWSPEEDAILKGLVNKFGARNWSLIARGVP-GRSGKSCRLRWCNQ 118
                          79******************************.***********985 PP
2Myb_DNA-binding52.61.1e-16125169147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r+++T eEd  +++ ++ +G++ W++Ia+ m+ gRt++ +k++w++ 
  Kalax.0034s0090.1.p 125 RKPFTDEEDRFIIESHAIHGNK-WAAIAKLMP-GRTDNAIKNHWNST 169
                          789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.8768119IPR017930Myb domain
SuperFamilySSF466891.51E-3170166IPR009057Homeodomain-like
SMARTSM007172.6E-1572121IPR001005SANT/Myb domain
PfamPF002495.1E-1773118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2674126IPR009057Homeodomain-like
CDDcd001671.15E-1475117No hitNo description
PROSITE profilePS5129426.451120174IPR017930Myb domain
SMARTSM007177.3E-17124172IPR001005SANT/Myb domain
PfamPF002495.5E-15125169IPR001005SANT/Myb domain
CDDcd001677.45E-13127170No hitNo description
Gene3DG3DSA:1.10.10.606.5E-24127174IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MPNYHEPMAN EDEPPTIHAV SGTPVVPHHD APPICGGCKD AEAVAAFESG GGGDSSGEDG  60
GSGGGGDGGN RVKGPWSPEE DAILKGLVNK FGARNWSLIA RGVPGRSGKS CRLRWCNQLD  120
PGVKRKPFTD EEDRFIIESH AIHGNKWAAI AKLMPGRTDN AIKNHWNSTL RRRITGVPRN  180
KPIPSGTVYP HFSANATRML LDHSLDGNKA SSEETLSNGD TNPVRQQNTG AMSLTDLTPD  240
LHSEENSQVN EVHHHSIAEE HPSIPRPVAR ISAFSIYNST PNPSLGSPFS RTGMMQDPKM  300
DFGIFKDLDD ICSDPMIPSQ CGFGCCASPN NGHSHSSLLG PEFVEYIEEP SFSSHELISI  360
ATDLNSIAWI KSGLENSGGK TAENETGPSV SPFTAPQIGL TTHPLNISYH QFVEGPSTLA  420
GMMQQALSTQ GLWQTNSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-40721746108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007009127.21e-133PREDICTED: myb-related protein Pp2
TrEMBLA0A061FMM31e-133A0A061FMM3_THECC; Myb domain protein 25, putative
STRINGEOY179371e-134(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.19e-91myb domain protein 109