PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0033s0116.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 232aa    MW: 25016.8 Da    PI: 6.5608
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0033s0116.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.8e-1888138255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrd s +g  +r +lg+f taeeAa a+++a+++++g
  Kalax.0033s0116.1.p  88 RYRGVRRRP-WGKFAAEIRDSSRRG--ARLWLGTFTTAEEAAVAYDKAALRIRG 138
                          7********.**********43343..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.2E-3288152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-3088147IPR001471AP2/ERF domain
PfamPF008471.6E-1288138IPR001471AP2/ERF domain
PROSITE profilePS5103224.01288146IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-2288147IPR016177DNA-binding domain
PRINTSPR003671.9E-1089100IPR001471AP2/ERF domain
CDDcd000186.61E-2296146No hitNo description
PRINTSPR003671.9E-10112128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MALGRDGARD GILESVWARV VAGTDGSASS SSGSGRGRGV WDEMPSLGLG GSWEELLDDL  60
IMPHASSEAL TEARKRPVSK SESVRARRYR GVRRRPWGKF AAEIRDSSRR GARLWLGTFT  120
TAEEAAVAYD KAALRIRGPR AYLNFPLAAK ATNPSDAPPD QRVNSENKPD ATSNYNPRKP  180
SSGCTLGNDQ AIDEPGPWKL ARVEENDGSG LHVIEFDDLG SDFLDSLLAT F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2685147264ATERF1
3gcc_A7e-2685147264ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007025491.23e-51PREDICTED: ethylene-responsive transcription factor ERF091
TrEMBLA0A061GFB64e-50A0A061GFB6_THECC; AP2/ERF domain-containing transcription factor, putative
TrEMBLA0A1R3I1743e-50A0A1R3I174_COCAP; Uncharacterized protein
STRINGEOY281136e-51(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.14e-15ethylene responsive element binding factor 2