PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0033s0113.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | FAR1 | ||||||||
Protein Properties | Length: 202aa MW: 23416.7 Da PI: 7.8253 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84.5 | 1.6e-26 | 41 | 126 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY +YA+++GF vr+ + +s+++g+i+ r+f C++eg+++++kk +++++ r gCka+++vk +++gkw++t++++eHnH+l Kalax.0033s0113.1.p 41 FYGRYAQRMGFVVRVMACWRSEKDGRIIARRFGCNREGHKRPNKKL---GIKPKKSFRGGCKAMVRVKCDRSGKWVITNFVSEHNHPLE 126 9*****************************************9998...99************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.4E-24 | 41 | 126 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MESDAFTPVL AEEEEEEEAA AQQWEPLVGM EFDSEEAAKL FYGRYAQRMG FVVRVMACWR 60 SEKDGRIIAR RFGCNREGHK RPNKKLGIKP KKSFRGGCKA MVRVKCDRSG KWVITNFVSE 120 HNHPLEDSNC DSRKEMDDKD LKIRELTREL NNKKRQCQFY KDQLDAIMNE VEKHVDELGK 180 KADIAAINIM EFESKKHKVL D* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010526071.1 | 5e-65 | PREDICTED: protein FAR1-RELATED SEQUENCE 5 | ||||
Swissprot | Q9SZL8 | 4e-21 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A1J3CN94 | 3e-63 | A0A1J3CN94_NOCCA; Protein FAR1-RELATED SEQUENCE 5 (Fragment) | ||||
TrEMBL | A0A1J3JBK4 | 2e-63 | A0A1J3JBK4_NOCCA; Protein FAR1-RELATED SEQUENCE 5 (Fragment) | ||||
STRING | XP_010526071.1 | 2e-64 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 9e-65 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0033s0113.1.p |
Publications ? help Back to Top | |||
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