PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0033s0050.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 349aa MW: 38039.8 Da PI: 8.9287

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0033s0050.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34	5.3e-11	281	326	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L++l+P+ +k s a++L +Av++Ik Lq Kalax.0033s0050.1.p 281 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 326 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.151	275	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-14	278	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.35E-11	279	330	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-13	280	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-8	281	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-13	281	331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MFPSSSESNS SSSHSQPSMA ARALNRNNAS VPADSLHADD NNNNNHHHHD FSPFLSPPHF 60 NLQPPPYHQY FSADSPSNCK VNNLNHHPPS ESKRLQRSGS GSDDFSIAAN LKIGASSSSP 120 PLARRSSSPA GFVAADSGGF SVPRGSSNYS RGNSSNGPGT SRLKPPLSST RQDSNMSLLS 180 GITENIIEGL NHGNGHRETH NYSYANDAWD NGASITFSGP PSKRNKNEEE YLNSFTGLEH 240 QFSLPQTTLE MATVEKLLQI PEDSVPCKIR AKRGYATHPR SIAERERRTR ISGKLKKLQD 300 LVPNMDKQTS YADMLDLAVQ HIKGLQNQVQ KLNKDMENCT CGCKRSTS*

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MFPSSSESNS SSSHSQPSMA ARALNRNNAS VPADSLHADD NNNNNHHHHD FSPFLSPPHF  60
NLQPPPYHQY FSADSPSNCK VNNLNHHPPS ESKRLQRSGS GSDDFSIAAN LKIGASSSSP  120
PLARRSSSPA GFVAADSGGF SVPRGSSNYS RGNSSNGPGT SRLKPPLSST RQDSNMSLLS  180
GITENIIEGL NHGNGHRETH NYSYANDAWD NGASITFSGP PSKRNKNEEE YLNSFTGLEH  240
QFSLPQTTLE MATVEKLLQI PEDSVPCKIR AKRGYATHPR SIAERERRTR ISGKLKKLQD  300
LVPNMDKQTS YADMLDLAVQ HIKGLQNQVQ KLNKDMENCT CGCKRSTS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011042788.1	1e-103	PREDICTED: transcription factor bHLH128-like
Refseq	XP_023925304.1	1e-103	transcription factor bHLH128-like
Swissprot	Q8H102	1e-68	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A2I4E4W5	1e-101	A0A2I4E4W5_JUGRE; transcription factor bHLH128-like
TrEMBL	F6I3R9	1e-101	F6I3R9_VITVI; Uncharacterized protein
STRING	VIT_05s0124g00240.t01	1e-102	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43140.2	1e-64	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0033s0050.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]