PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0033s0033.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 363aa MW: 40743.9 Da PI: 6.52 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.2 | 1.2e-15 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++ Ed++l+ ++++G ++W++ ++ g+ R++k+c++rw +yl Kalax.0033s0033.1.p 16 KGPWSPKEDLRLISFIQKYGHENWRALPKQAGLLRCGKSCRLRWINYL 63 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 49.3 | 1.1e-15 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+e ++++ + G++ W++Ia++++ gRt++++k+ w+++l Kalax.0033s0033.1.p 69 RGNFTKEEEETIIRLQQSIGNK-WSRIAAHLP-GRTDNEIKNVWNTHL 114 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.262 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.99E-29 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.3E-12 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-23 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.62E-10 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 25.094 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 6.6E-14 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-14 | 69 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-27 | 71 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.78E-10 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MGRGRAPCCD QSRVTKGPWS PKEDLRLISF IQKYGHENWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDLKRG NFTKEEEETI IRLQQSIGNK WSRIAAHLPG RTDNEIKNVW NTHLKKKLTS 120 RAAVSVPKED QVTKESPSSA IKFSSSSAQV ESNPNNNQKN EKDSQINLLP LDGSPTILAP 180 NISTLANPHY DHLFNSSGIN QLEQFTMWED PNILESLLNT QEDPNWVLAP QNTQPDSTKN 240 FSGELSVVSE FDLWSTLKID GIPAPAKPDD KEGNKIQTVE APMGMNTAHE YITDKDIDSM 300 FWYLETEPRL PEISVEMIEK PKQYQGVNLS HIIPAAATGS AVNETPGVDY FPVASISHLS 360 LSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 6e-26 | 14 | 118 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 5e-26 | 14 | 118 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 5e-26 | 14 | 118 | 2 | 105 | C-Myb DNA-Binding Domain |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00249 | DAP | Transfer from AT1G79180 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79180.1 | 5e-73 | myb domain protein 63 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0033s0033.1.p |