PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0032s0145.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 530aa    MW: 59693.5 Da    PI: 7.5303
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0032s0145.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.25.2e-2965148187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW++ e+laLi++r+em+ ++r++ +k+plW+evs+k+++ gf+rs+k+Ckek+en+ k+y+++ke+ ++   ++ +t++yf+qlea
  Kalax.0032s0145.1.p  65 RWPRAETLALIKVRSEMDAAFRESGAKGPLWDEVSRKLAALGFSRSSKKCKEKFENIYKYYRRTKESGQR---PNGKTYRYFEQLEA 148
                          8******************************************************************998...45668*******85 PP
2trihelix104.57.9e-33359443186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          rW++ ev aLi +r+  + ++++++ k+plWee+s++m++rg+ rs+k+Ckekwen+nk++k++++++kkr +e+s+tcpyf+ l+
  Kalax.0032s0145.1.p 359 RWPRAEVEALISVRSTFDLQYQENSPKGPLWEEISAAMQRRGYDRSAKRCKEKWENINKYFKRVRDSNKKR-PEDSRTCPYFHLLD 443
                          8*********************************************************************8.99*********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.1258122IPR017877Myb-like domain
SMARTSM007170.001462124IPR001005SANT/Myb domain
PfamPF138373.5E-2064149No hitNo description
CDDcd122033.17E-2564129No hitNo description
Gene3DG3DSA:1.10.10.603.0E-4351415IPR009057Homeodomain-like
PROSITE profilePS500907.41352416IPR017877Myb-like domain
SMARTSM007170.0027356418IPR001005SANT/Myb domain
PfamPF138371.5E-23358445No hitNo description
CDDcd122038.40E-25358423No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MLGASSFTTN PAAAQGLLVV HGTASGKDLN AKGGGVDSQG AVGAFQDDER GRELEENDRN  60
FAGNRWPRAE TLALIKVRSE MDAAFRESGA KGPLWDEVSR KLAALGFSRS SKKCKEKFEN  120
IYKYYRRTKE SGQRPNGKTY RYFEQLEAID RQPSPLTAIL PSATAMDRSS LIRATAMAIN  180
VDPLSVCVNA GVDCPMQNAA DNGGNGGNNV TNSSTWTNST SKESEGMGRK AKKKRKFSEF  240
FDRLMTEVTM KQEELQRRFA EAIERYEVDR IKREEAWRVQ ETARIRREHE MLAHERSIAA  300
AKDAAVIAIL QKFLQQEIPV HFTDDIPITV APKEKSPEEQ AKESYKADSV LQNSYSSSRW  360
PRAEVEALIS VRSTFDLQYQ ENSPKGPLWE EISAAMQRRG YDRSAKRCKE KWENINKYFK  420
RVRDSNKKRP EDSRTCPYFH LLDSLYKQKA GNSNPRLDGT ASGQNNLMAP QSSYEMEQQQ  480
NELARMVGSN MDPNPTPDES EEEQGIEDRE NYQVVANNSH PSMEEGHNL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075316.11e-144trihelix transcription factor GT-2
RefseqXP_021887620.11e-144trihelix transcription factor GT-2-like isoform X1
TrEMBLA0A1R3GCN91e-145A0A1R3GCN9_COCAP; Uncharacterized protein
STRINGevm.model.supercontig_2611.11e-143(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-104Trihelix family protein