PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0032s0139.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 341aa    MW: 36160.9 Da    PI: 8.9221
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0032s0139.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-19129178255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa+a++ a++ ++g
  Kalax.0032s0139.1.p 129 RYRGVRQRP-WGKWAAEIRDPY----KaTRVWLGTFDTAEAAARAYDVAALGFRG 178
                          7********.**********76....35**********************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-22129187IPR016177DNA-binding domain
PROSITE profilePS5103225.515129186IPR001471AP2/ERF domain
SMARTSM003801.6E-36129192IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-32129187IPR001471AP2/ERF domain
PfamPF008471.1E-12129178IPR001471AP2/ERF domain
PRINTSPR003675.3E-12130141IPR001471AP2/ERF domain
CDDcd000182.76E-16137188No hitNo description
PRINTSPR003675.3E-12152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009749Biological Processresponse to glucose
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MNREAEALSN WGAFMGFDRE QEMSAMVNAL TNVVSGHGGS TSGFDSYLAS SSPPLGGLKR  60
RRQDDAVTVT GACRAQDELI YATGTSSVMS LSHAMTEALS SGPAEPTLVP TYVHADVNQG  120
FVGEGERRRY RGVRQRPWGK WAAEIRDPYK ATRVWLGTFD TAEAAARAYD VAALGFRGNK  180
AKLNFPENVS LRPPPQLASP AAQMTFSGGQ SSLLNVGGMQ SHGLQYTLLS GSSYSNLGSS  240
SAPHQHVHGY QSLAASAALD QQLNQMVPRF QSQTMSLLEQ RMLASSMPFQ SSPSSSASSS  300
WQSSSSSPPL SHHSQATART GLDGGARQSQ NSGNNNPSPP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-21117191177Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of the abscisic acid (ABA) signaling pathway involved in seed germination and in responses to stress conditions. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16227468}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00584DAPTransfer from AT5G64750Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and stresses, including cold, drought and salt (PubMed:16227468, PubMed:26961720). Triggered by YY1 (PubMed:26961720). {ECO:0000269|PubMed:16227468, ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024021449.11e-45ethylene-responsive transcription factor ABR1
SwissprotQ9FGF83e-32ABR1_ARATH; Ethylene-responsive transcription factor ABR1
TrEMBLA0A2P5BG718e-47A0A2P5BG71_PARAD; AP2/ERF transcription factor
STRINGGLYMA05G32040.11e-42(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.18e-25ERF family protein
Publications ? help Back to Top
  1. Choi DS,Hwang BK
    Proteomics and functional analyses of pepper abscisic acid-responsive 1 (ABR1), which is involved in cell death and defense signaling.
    Plant Cell, 2011. 23(2): p. 823-42
    [PMID:21335377]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  4. Sanyal SK, et al.
    Arabidopsis CBL interacting protein kinase 3 interacts with ABR1, an APETALA2 domain transcription factor, to regulate ABA responses.
    Plant Sci., 2017. 254: p. 48-59
    [PMID:27964784]
  5. Choi SW,Lee SB,Na YJ,Jeung SG,Kim SY
    Arabidopsis MAP3K16 and Other Salt-Inducible MAP3Ks Regulate ABA Response Redundantly.
    Mol. Cells, 2017. 40(3): p. 230-242
    [PMID:28292003]