PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0032s0052.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | SBP | ||||||||
Protein Properties | Length: 257aa MW: 28577.5 Da PI: 9.5799 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132.9 | 1.1e-41 | 140 | 217 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq egC+adls+ak+yhrrhkvCe+hska++v++ gl+qrfCqqCsrfh l+efD++krsCrrrLa+hn+rrrk+ + Kalax.0032s0052.1.p 140 RCQTEGCAADLSNAKQYHRRHKVCEFHSKAATVITGGLTQRFCQQCSRFHLLTEFDNGKRSCRRRLAEHNRRRRKTPQ 217 6**************************************************************************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.9E-35 | 133 | 202 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.505 | 138 | 215 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.7E-38 | 139 | 218 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.2E-31 | 141 | 214 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MLEYELWGTP SQMTLANSGH DPPAVASHHG VETFSTNAGS SHPQSHHSAL PLDYAHQNAA 60 FWSSPNPYTF SYAPLRHQNA AFYSSANPNF FLKTEEASPG TRLGLNLGRR TYFSAQDDGF 120 VSRLYRRGGL GGSGSVSAPR CQTEGCAADL SNAKQYHRRH KVCEFHSKAA TVITGGLTQR 180 FCQQCSRFHL LTEFDNGKRS CRRRLAEHNR RRRKTPQQPS SQGQLELRKS HMDNSSSETL 240 ASNYNDDNIN SFIKQP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 9e-33 | 131 | 214 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017216598.1 | 2e-71 | PREDICTED: squamosa promoter-binding-like protein 8 | ||||
Refseq | XP_017216599.1 | 2e-71 | PREDICTED: squamosa promoter-binding-like protein 8 | ||||
Refseq | XP_017216600.1 | 2e-71 | PREDICTED: squamosa promoter-binding-like protein 8 | ||||
Swissprot | Q8GXL3 | 1e-60 | SPL8_ARATH; Squamosa promoter-binding-like protein 8 | ||||
TrEMBL | A0A2C9VVM1 | 5e-68 | A0A2C9VVM1_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_023056m | 9e-69 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 1e-43 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0032s0052.1.p |
Publications ? help Back to Top | |||
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