PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0032s0021.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | FAR1 | ||||||||
Protein Properties | Length: 157aa MW: 18397.2 Da PI: 9.716 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 30.2 | 1.5e-09 | 2 | 58 | 31 | 89 |
FAR1 31 rtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 r+fvCsk+ ++ ek++ +++ +r+ tr gC ++ + ++dg++ v+ e eHnH + Kalax.0032s0021.1.p 2 RQFVCSKKRNKIVEKES--NRSYSRNITRFGCPIFIQFSIDRDGRYTVQCHEMEHNHVF 58 89******999998877..88999*********************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-6 | 2 | 58 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MRQFVCSKKR NKIVEKESNR SYSRNITRFG CPIFIQFSID RDGRYTVQCH EMEHNHVFSD 60 IRERHLMRSQ RSISDEQIEL LKSFRKCGIK LSDAIRFLKC QYGGSPNIGF INIYAYNVLG 120 NPDCKTFNGS DASCLIEIFK KRQKIEVDFF LKFQFG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-12 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0032s0021.1.p |