PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0031s0099.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Dof

Protein Properties

Length: 214aa MW: 22904.3 Da PI: 8.2061

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0031s0099.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.4	3.1e-38	17	77	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e++lkcprCds ntkfCyynny+lsqPr++Ck+C+ryWtkGG+lrn+PvGg++rk k+s Kalax.0031s0099.1.p 17 EEEKLKCPRCDSLNTKFCYYNNYNLSQPRHYCKSCKRYWTKGGSLRNIPVGGSSRKTTKRS 77 6899****************************************************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-24	13	68	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.7E-33	19	75	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.36	21	75	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	23	59	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MEELAAYQSI KPPQFQEEEK LKCPRCDSLN TKFCYYNNYN LSQPRHYCKS CKRYWTKGGS 60 LRNIPVGGSS RKTTKRSSSS NSVTRKAAAP SSSNSAHRPE SGPKYAFSDD QESTVLSMGG 120 GAGGFGLSFS SLMPSEGQLG HSIVGAMNGS GYGGFQSALF GTAFGHKGLD SGTEVTNVSE 180 GFLGIQHGNE QWSSGGEHVW PDLAIYTPSP TFE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003529737.1	3e-56	dof zinc finger protein DOF3.1
Refseq	XP_028238849.1	3e-56	dof zinc finger protein DOF3.1-like
Swissprot	O82155	1e-37	DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBL	A0A445JQM7	7e-55	A0A445JQM7_GLYSO; Dof zinc finger protein DOF1.7
TrEMBL	K7KYZ6	7e-55	K7KYZ6_SOYBN; Uncharacterized protein
STRING	GLYMA07G01461.1	1e-55	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	7e-33	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Kalax.0031s0099.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]