PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0031s0052.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 401aa    MW: 44456.7 Da    PI: 4.4263
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0031s0052.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19131180255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+G+r+++ +g+W+AeIrdp   gk  r++lg+f taeeAa+a++a +++++g
  Kalax.0031s0052.1.p 131 QYRGIRQRP-WGKWAAEIRDP---GKGVRVWLGTFNTAEEAARAYDAEARRIRG 180
                          69*******.**********8...545*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.17E-31131189No hitNo description
SMARTSM003802.3E-38131194IPR001471AP2/ERF domain
PROSITE profilePS5103223.723131188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-32131189IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-22131189IPR016177DNA-binding domain
PRINTSPR003671.2E-11132143IPR001471AP2/ERF domain
PfamPF008474.3E-12132180IPR001471AP2/ERF domain
PRINTSPR003671.2E-11154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MCGGAIISDF IPSSKSRRLT AEFLWPDQQH KRKSGGWKGS SRFSRQLKPE IVDVVDDDDD  60
DDEDDDDDFE ADFQGFKDES DDEKGVEVEM RPFDFKATAA KSASSQAPKP VKSAEFNGLA  120
EKSAKRKRKN QYRGIRQRPW GKWAAEIRDP GKGVRVWLGT FNTAEEAARA YDAEARRIRG  180
NKAKVNFPEE SSPTAPKCAP KVNSQSKRSN PSANIYGNRS FGSNNKSDQD YFNCLDLMEE  240
KPLNQQYGYM SSFPAADQVA PKSLSPSDGA NTYFTSDQGS NSFDCSDFGW GGARTPEITS  300
ILSATLEGDE SDFLEEANPT KKSKPVFDNE MPAEENPVEK LSEEFAAYES QMKLFQIPYD  360
GSSWNASMDN MLNGEITQDA GNPMDLWSFD DASPTMGGIF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-21131188260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-21131188563ATERF1
3gcc_A9e-21131188563ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021293850.11e-142ethylene-responsive transcription factor RAP2-12-like
TrEMBLD5L1391e-140D5L139_MALDO; AP2 domain class transcription factor
STRINGXP_008340186.11e-139(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.33e-67related to AP2 2