PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0031s0038.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 388aa    MW: 43578.7 Da    PI: 7.714
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0031s0038.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.23e-16143188147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  Kalax.0031s0038.1.p 143 RGHWRPAEDAKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 188
                          899*****************************.***********996 PP
2Myb_DNA-binding53.36.2e-17195238146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          r +++++E+e+l  a++ +G++ W+ Iar ++ gRt++++k++w+ 
  Kalax.0031s0038.1.p 195 RRAFSEDEEERLMAAHRAYGNK-WAMIARLFP-GRTDNSVKNHWHV 238
                          678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.609138189IPR017930Myb domain
SMARTSM007172.4E-14142191IPR001005SANT/Myb domain
PfamPF002497.2E-16143188IPR001005SANT/Myb domain
SuperFamilySSF466892.28E-27143240IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-25144196IPR009057Homeodomain-like
CDDcd001672.10E-13146187No hitNo description
PROSITE profilePS5129425.878190244IPR017930Myb domain
SMARTSM007171.7E-13194242IPR001005SANT/Myb domain
PfamPF002491.5E-13195237IPR001005SANT/Myb domain
CDDcd001671.11E-10197237No hitNo description
Gene3DG3DSA:1.10.10.604.0E-20197243IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MKAMANNKCV IPPGFYADSS FTNGGGVGLI SHYHHHHHHN PSMGLMFQGM GSLSLDLNSS  60
SNPPSAQESL ASKRPDKQME FPASEAGEEN CKGSSDYSDD RVCGSSREFV DLNASLVEDD  120
TETTCHGNNK DAAESGPSKF FTRGHWRPAE DAKLKELVAL YGPQNWNLIA EKLEGRSGKS  180
CRLRWFNQLD PRINRRAFSE DEEERLMAAH RAYGNKWAMI ARLFPGRTDN SVKNHWHVIM  240
ARKYREQSTA YRRRKLSQTI YRKIEDRQNP TPPPPYTGFC LPHPAHPFSP NNFAVPASYN  300
NCNNSVLLHA HHLHQQQQIS FELMSGSKNR DMMMHMMMFD GPSYTHQNQQ QADNNINQIS  360
PDPLNSSPAP PPSQPPLFID FLGVGAM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-321412435107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465930.18e-92PREDICTED: transcription factor MYB108-like
RefseqXP_017618770.19e-92PREDICTED: myb-like protein Q
TrEMBLA0A0B0NX309e-91A0A0B0NX30_GOSAR; Transcription factor MYB44-like protein
TrEMBLA0A0D2SAT52e-90A0A0D2SAT5_GOSRA; Uncharacterized protein
TrEMBLA0A2P5XVG31e-90A0A2P5XVG3_GOSBA; Uncharacterized protein
STRINGGorai.013G086400.13e-91(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-74myb domain protein 105